| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636151
Identifier: 221636151
GI number: 221636151
Start: 733470
End: 735029
Strand: Reverse
Name: 221636151
Synonym: trd_A0745
Alternate gene names: NA
Gene position: 735029-733470 (Counterclockwise)
Preceding gene: 221636152
Following gene: 221636149
Centisome position: 80.09
GC content: 66.73
Gene sequence:
>1560_bases ATGAGGAAATGCGCGGCTCACGAGTGGATATCCGTTTTTGCGTATCCTCGTGGTCGGCACGTTGGCTCACTCGGTTCTCC GGCAGGACGGCGTTGCGGTTCGCCGCGAGAGATCCGGAATGGAGTCGAGGTCGATGCGGGTGTGACGCGCACCGGCTGTC CGATGACCCGGGCACCGTTTGCCGTCACGATGGAGGCGCGCAGCGACCAACCGGCGCAGTGCGGACTGGATGCTGCTCCT CACCAGGAGAAGCGATCGTGCGTGGCAGAGCGGAGACGGTCGGTGAAGGGGGTTGGAGCGATGGACGAGCAGGGGAACGC TGAGGGGTTGGTGCGCGAGGCAACGCGCTTTTCAGCGGAGCGACCACACTGGGTTCGGCCCAGTTACGACGGGTTCGGCC TCGTCAACCTGCCATGGTCGATCCTGGCCAGCCTGGGGGGCGAGCTGGAGGGGCAGCCGGTTTCTCCAGCGATCTGGCCG AGCGAGTTGGCCGATGGGATCGAGGCTGTTCTGCTCGTGATCATCGATGGACTGGGTTACGAACGGCTGCAGCGCGCGCT GGCGGAGGGAGAGACGCCCGGGCTGGCCAGATTGGCGCGTGAGGGCATACTCTTCCCGCTCACCTCGGTCTTCCCCTCGA CGACTGTCGCGGCGTTGACGACGCTGGCGACCGGTTACCCGCCGAGTCAGCATGGCTTGCTCGGCTTCACGGTCTTTCTG CGCGAGTTCGGCATGCTCTCCAATCTCCTGCTCTGGTCGCCGCTCGGGCGATTTCCCAGCTACGCGAGCCTGGGGCTGGA ACCACGCTCGTTCCTGCCTGTTCCGACGATCGCCGAGCGAGCCGCGCGAGCCGGCATCCACGCGACGGTGGTGAGCCCGG AGGCGTTTCGCGACACGCCCCTGACCAAGATGCAGGCGGCTGGTGCCGAATTCCGCGGATATCGGACACCCGGCGAGTTC GTGGCGCAGGTTCACGCTGCGCTCGTCCGGCCGGGTCGCCAGTTGGTGACGGCCTATTGGGATACGCTGGACACGCTGGG CCACTTCGTGGGGCCGGAATCAGCGGCCTGGCGTATCGAGTTCCGGCAGTTCGATCGCTTGCTGGCCGACGAGCTCCTGG CTCGACTCCCGCGGCGTAACCTGCTCGTCGTCATCACCGCCGATCACGGGATGGTCTCCCTGGATCCAGCGCGGCAACGA CCGCTCACCGATCCCGCACTGCTGGCCGAACTGCGGGTCCCGCCGGCTGGCGAGCGTCGCGCCGTCTATCTGCACCCGGT GACCGGCGCAGAAGAGTCCGTACAGGCGCGCCTGACAGCGCTGGCGGGCGAGGACGGATGGGTGTCCAGTCGAGACGAGC TCTTCGCGCAGGGGCTGTTCGGTCCCCTGCCGTACCATCCGGAAGCGCTGCATCGGGTGGGTGAACTGGTCCTGATCGCA GTCGAGGGAGCGGGTTTCCCGTGGGATCCACCTGGGGCATCAAGTCGCGTCTTTCTCGGGGCACATGCCGGGCTGGAAGC GGTCGAGCAACTGGTGCCGTGTCTGATCTGGCGTCCGTGA
Upstream 100 bases:
>100_bases AGAGCGCCGAACTCCCGCGGCTTCTCGAAGCGAGCGGTGCGGACGTAACTGAGGACCGAACTGCTCGGGCGGATCGGGAA CTGGCACCGACGAACTGTCG
Downstream 100 bases:
>100_bases GCCGTCACAGTTGGAGCCAGATAGCGAGCGAGCCGGCTGCCAGGAGAAGGGGGACGAGGAGGAACCCGAGCAGGATGTAC TGGCGGACTGAAACCGTGAT
Product: type I phosphodiesterase/nucleotide pyrophosphatase
Products: NA
Alternate protein names: Phosphodiesterase; Type I Phosphodiesterase / Nucleotide Pyrophosphatase; AP Superfamily Protein; Nucleotide Pyrophosphatase; Phosphodiesterase/Nucleotide Pyrophosphatase; LOW QUALITY PROTEIN Phosphodiesterase; Truncated Phosphodiesterase; Phosphodiesterase Protein; Protein Of AP Superfamily
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MRKCAAHEWISVFAYPRGRHVGSLGSPAGRRCGSPREIRNGVEVDAGVTRTGCPMTRAPFAVTMEARSDQPAQCGLDAAP HQEKRSCVAERRRSVKGVGAMDEQGNAEGLVREATRFSAERPHWVRPSYDGFGLVNLPWSILASLGGELEGQPVSPAIWP SELADGIEAVLLVIIDGLGYERLQRALAEGETPGLARLAREGILFPLTSVFPSTTVAALTTLATGYPPSQHGLLGFTVFL REFGMLSNLLLWSPLGRFPSYASLGLEPRSFLPVPTIAERAARAGIHATVVSPEAFRDTPLTKMQAAGAEFRGYRTPGEF VAQVHAALVRPGRQLVTAYWDTLDTLGHFVGPESAAWRIEFRQFDRLLADELLARLPRRNLLVVITADHGMVSLDPARQR PLTDPALLAELRVPPAGERRAVYLHPVTGAEESVQARLTALAGEDGWVSSRDELFAQGLFGPLPYHPEALHRVGELVLIA VEGAGFPWDPPGASSRVFLGAHAGLEAVEQLVPCLIWRP
Sequences:
>Translated_519_residues MRKCAAHEWISVFAYPRGRHVGSLGSPAGRRCGSPREIRNGVEVDAGVTRTGCPMTRAPFAVTMEARSDQPAQCGLDAAP HQEKRSCVAERRRSVKGVGAMDEQGNAEGLVREATRFSAERPHWVRPSYDGFGLVNLPWSILASLGGELEGQPVSPAIWP SELADGIEAVLLVIIDGLGYERLQRALAEGETPGLARLAREGILFPLTSVFPSTTVAALTTLATGYPPSQHGLLGFTVFL REFGMLSNLLLWSPLGRFPSYASLGLEPRSFLPVPTIAERAARAGIHATVVSPEAFRDTPLTKMQAAGAEFRGYRTPGEF VAQVHAALVRPGRQLVTAYWDTLDTLGHFVGPESAAWRIEFRQFDRLLADELLARLPRRNLLVVITADHGMVSLDPARQR PLTDPALLAELRVPPAGERRAVYLHPVTGAEESVQARLTALAGEDGWVSSRDELFAQGLFGPLPYHPEALHRVGELVLIA VEGAGFPWDPPGASSRVFLGAHAGLEAVEQLVPCLIWRP >Mature_519_residues MRKCAAHEWISVFAYPRGRHVGSLGSPAGRRCGSPREIRNGVEVDAGVTRTGCPMTRAPFAVTMEARSDQPAQCGLDAAP HQEKRSCVAERRRSVKGVGAMDEQGNAEGLVREATRFSAERPHWVRPSYDGFGLVNLPWSILASLGGELEGQPVSPAIWP SELADGIEAVLLVIIDGLGYERLQRALAEGETPGLARLAREGILFPLTSVFPSTTVAALTTLATGYPPSQHGLLGFTVFL REFGMLSNLLLWSPLGRFPSYASLGLEPRSFLPVPTIAERAARAGIHATVVSPEAFRDTPLTKMQAAGAEFRGYRTPGEF VAQVHAALVRPGRQLVTAYWDTLDTLGHFVGPESAAWRIEFRQFDRLLADELLARLPRRNLLVVITADHGMVSLDPARQR PLTDPALLAELRVPPAGERRAVYLHPVTGAEESVQARLTALAGEDGWVSSRDELFAQGLFGPLPYHPEALHRVGELVLIA VEGAGFPWDPPGASSRVFLGAHAGLEAVEQLVPCLIWRP
Specific function: Unknown
COG id: COG1524
COG function: function code R; Uncharacterized proteins of the AP superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56252; Mature: 56252
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKCAAHEWISVFAYPRGRHVGSLGSPAGRRCGSPREIRNGVEVDAGVTRTGCPMTRAPF CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHCCCEECCCCCCCCCCCCCCCE AVTMEARSDQPAQCGLDAAPHQEKRSCVAERRRSVKGVGAMDEQGNAEGLVREATRFSAE EEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC RPHWVRPSYDGFGLVNLPWSILASLGGELEGQPVSPAIWPSELADGIEAVLLVIIDGLGY CCCCCCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCH ERLQRALAEGETPGLARLAREGILFPLTSVFPSTTVAALTTLATGYPPSQHGLLGFTVFL HHHHHHHHCCCCCHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH REFGMLSNLLLWSPLGRFPSYASLGLEPRSFLPVPTIAERAARAGIHATVVSPEAFRDTP HHHHHHHHHHHHCCHHCCCCCHHCCCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCCC LTKMQAAGAEFRGYRTPGEFVAQVHAALVRPGRQLVTAYWDTLDTLGHFVGPESAAWRIE CHHHHHCCCHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEH FRQFDRLLADELLARLPRRNLLVVITADHGMVSLDPARQRPLTDPALLAELRVPPAGERR HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECHHHCCCCCCHHHHHHCCCCCCCCCC AVYLHPVTGAEESVQARLTALAGEDGWVSSRDELFAQGLFGPLPYHPEALHRVGELVLIA EEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCEEEEE VEGAGFPWDPPGASSRVFLGAHAGLEAVEQLVPCLIWRP EECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRKCAAHEWISVFAYPRGRHVGSLGSPAGRRCGSPREIRNGVEVDAGVTRTGCPMTRAPF CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHCCCEECCCCCCCCCCCCCCCE AVTMEARSDQPAQCGLDAAPHQEKRSCVAERRRSVKGVGAMDEQGNAEGLVREATRFSAE EEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC RPHWVRPSYDGFGLVNLPWSILASLGGELEGQPVSPAIWPSELADGIEAVLLVIIDGLGY CCCCCCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCH ERLQRALAEGETPGLARLAREGILFPLTSVFPSTTVAALTTLATGYPPSQHGLLGFTVFL HHHHHHHHCCCCCHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH REFGMLSNLLLWSPLGRFPSYASLGLEPRSFLPVPTIAERAARAGIHATVVSPEAFRDTP HHHHHHHHHHHHCCHHCCCCCHHCCCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCCC LTKMQAAGAEFRGYRTPGEFVAQVHAALVRPGRQLVTAYWDTLDTLGHFVGPESAAWRIE CHHHHHCCCHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEH FRQFDRLLADELLARLPRRNLLVVITADHGMVSLDPARQRPLTDPALLAELRVPPAGERR HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECHHHCCCCCCHHHHHHCCCCCCCCCC AVYLHPVTGAEESVQARLTALAGEDGWVSSRDELFAQGLFGPLPYHPEALHRVGELVLIA EEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCEEEEE VEGAGFPWDPPGASSRVFLGAHAGLEAVEQLVPCLIWRP EECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA