| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636050
Identifier: 221636050
GI number: 221636050
Start: 636144
End: 637547
Strand: Reverse
Name: 221636050
Synonym: trd_A0644
Alternate gene names: NA
Gene position: 637547-636144 (Counterclockwise)
Preceding gene: 221636051
Following gene: 221636049
Centisome position: 69.47
GC content: 71.08
Gene sequence:
>1404_bases ATGGTCTTACCGGTCGTGTCGACACCGAACGGAGTGCACGAGCGGGCTGGCCCGCGGCCCGGGGATCTGGGAAGCGACGC GCAGGCGTTCCTGGCGATCCTGGCGACACTGCTCGGGCTGGTGCCGACTGGGGAGGAAGGACCGGGAAACGGGTTGATGC CCGCAGACGCCAGCGCAGCCGAGGGCAGGACGCGCGAACTGACGCACCGGTTGGAAGAGTCGGTCATGCCGGACAGCATG CTGTTCGGTGTCGCACAGGCTGGGTTGGTGCTGGCCGGAGTAGCGAGCACGGACGGACAAATGAAGGGTCAGTCGCATGG CGAGCGACGCTCCGACACGCCGCGGTTGGGCACCGTCTTCGCTGCTGGGATGGTGCCATCCGAGCTCGGCGTACTGACCG GCCTCGCCGGCACGCTATCGGTCGATGATGGCCAGGCGAGCGCGGTGATCGGGGAACCAGCGATCGCTCAGCAGTCAGCG AGCCTGCTCGAGTACGCGCAGTCGAGTGGGCAAGCGGCGTTGGGTGAACCGGCGAGCGGAGCCGTGCAGGCTGGGGACGA GGGACAGCCGAAAGGGTGGCAGGGTCCGACGGTCGGCGCGCTCCTGCAGCACACGGCTGCGGGTGCCGGCGGACCCGTCG CGTTGGACGAAGCTGGGCGGGCTGCCGCGCACCGGATAGCGCACCGAGTCGAGCCGGTGGGAGGGTCCGAAGGAGTCGGG GTTACCCCTGAGCGAGGAAGTGAGGCGGTGCAGCGAGTGCCCGCGGGGGTACGCGTCTGGGTCGAGGAGCAGGCGTCGGA TGGTCGAGGCCAGGCGCTGACGGTGGCGACTGAGCGGCGCGTCCGGCACGACGACCGGCCGGCGCTCGCGGGAGCCCTCC CGGTGAGCGACACTCCGGGCAGTCGACTGGGTGAGGCTGGGCCGGTTCCGGCTGCTGGCGAGGAAGCAGCCGCGGGCGCG ATCGGACAGGTGCAGGAGCGCGTGGCGCAGGCGATCGCGCACGGCACGCGGCAGCTCCGCGTGCGGCTGGAGCCGCCCGA CCTGGGAGTGGTCGACGTACGCATCCGCGAGATTGCGGGGCGACTGGAGGTGACGCTGGCGGCCAACCAGCCGGAGGTAC GGCAGGCGCTGGAAGCCGGACGGGAGAGCCTGCGTGCCTCGCTCGCGGCGGGAGGGTTCGCGGTGCAACGGGTGGAGGTG CAGCCGCTGACGATGGCGAGTGGGCAGAACGGGATCAGCGGCAGTCAATCCGGAATGGGTTGGCCGGGCGGGCAACAGGG AGCCTCGAGCGATCCTGGTTGGGCACGCCCCGAGCGGACGGCCCTGGACCAGCTGCCGGTGGTAGGGGACTCCCGAGGGC GAGTGCGCCAGGAGTCGAGCGGACTCGTGGACACGTGGGCTTGA
Upstream 100 bases:
>100_bases AGCGCGGTGAGCGAAGTCCTGGCGCGACGCCTGGCCATGCTGCGTGCCATGGCGAGCGGCGGTCAGGGTAGCTGAGTGCC TCGAGCGGGGAGGTGCGGTG
Downstream 100 bases:
>100_bases GTGGCGAGGTGGAGCGATGAGCGTCGGAAGTGTGAGCGACTCGAACGGTCCGGTGACGACGAACCCATTATCGTCCGGCG GCGGTGTGGGCCCCGGTGGC
Product: putative MotD chemotaxis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MVLPVVSTPNGVHERAGPRPGDLGSDAQAFLAILATLLGLVPTGEEGPGNGLMPADASAAEGRTRELTHRLEESVMPDSM LFGVAQAGLVLAGVASTDGQMKGQSHGERRSDTPRLGTVFAAGMVPSELGVLTGLAGTLSVDDGQASAVIGEPAIAQQSA SLLEYAQSSGQAALGEPASGAVQAGDEGQPKGWQGPTVGALLQHTAAGAGGPVALDEAGRAAAHRIAHRVEPVGGSEGVG VTPERGSEAVQRVPAGVRVWVEEQASDGRGQALTVATERRVRHDDRPALAGALPVSDTPGSRLGEAGPVPAAGEEAAAGA IGQVQERVAQAIAHGTRQLRVRLEPPDLGVVDVRIREIAGRLEVTLAANQPEVRQALEAGRESLRASLAAGGFAVQRVEV QPLTMASGQNGISGSQSGMGWPGGQQGASSDPGWARPERTALDQLPVVGDSRGRVRQESSGLVDTWA
Sequences:
>Translated_467_residues MVLPVVSTPNGVHERAGPRPGDLGSDAQAFLAILATLLGLVPTGEEGPGNGLMPADASAAEGRTRELTHRLEESVMPDSM LFGVAQAGLVLAGVASTDGQMKGQSHGERRSDTPRLGTVFAAGMVPSELGVLTGLAGTLSVDDGQASAVIGEPAIAQQSA SLLEYAQSSGQAALGEPASGAVQAGDEGQPKGWQGPTVGALLQHTAAGAGGPVALDEAGRAAAHRIAHRVEPVGGSEGVG VTPERGSEAVQRVPAGVRVWVEEQASDGRGQALTVATERRVRHDDRPALAGALPVSDTPGSRLGEAGPVPAAGEEAAAGA IGQVQERVAQAIAHGTRQLRVRLEPPDLGVVDVRIREIAGRLEVTLAANQPEVRQALEAGRESLRASLAAGGFAVQRVEV QPLTMASGQNGISGSQSGMGWPGGQQGASSDPGWARPERTALDQLPVVGDSRGRVRQESSGLVDTWA >Mature_467_residues MVLPVVSTPNGVHERAGPRPGDLGSDAQAFLAILATLLGLVPTGEEGPGNGLMPADASAAEGRTRELTHRLEESVMPDSM LFGVAQAGLVLAGVASTDGQMKGQSHGERRSDTPRLGTVFAAGMVPSELGVLTGLAGTLSVDDGQASAVIGEPAIAQQSA SLLEYAQSSGQAALGEPASGAVQAGDEGQPKGWQGPTVGALLQHTAAGAGGPVALDEAGRAAAHRIAHRVEPVGGSEGVG VTPERGSEAVQRVPAGVRVWVEEQASDGRGQALTVATERRVRHDDRPALAGALPVSDTPGSRLGEAGPVPAAGEEAAAGA IGQVQERVAQAIAHGTRQLRVRLEPPDLGVVDVRIREIAGRLEVTLAANQPEVRQALEAGRESLRASLAAGGFAVQRVEV QPLTMASGQNGISGSQSGMGWPGGQQGASSDPGWARPERTALDQLPVVGDSRGRVRQESSGLVDTWA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47429; Mature: 47429
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLPVVSTPNGVHERAGPRPGDLGSDAQAFLAILATLLGLVPTGEEGPGNGLMPADASAA CEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC EGRTRELTHRLEESVMPDSMLFGVAQAGLVLAGVASTDGQMKGQSHGERRSDTPRLGTVF CCHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH AAGMVPSELGVLTGLAGTLSVDDGQASAVIGEPAIAQQSASLLEYAQSSGQAALGEPASG HHCCCHHHHHHHHCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC AVQAGDEGQPKGWQGPTVGALLQHTAAGAGGPVALDEAGRAAAHRIAHRVEPVGGSEGVG CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCC VTPERGSEAVQRVPAGVRVWVEEQASDGRGQALTVATERRVRHDDRPALAGALPVSDTPG CCCCCCHHHHHHCCCCEEEEEECCCCCCCCCEEEEEHHHHHCCCCCCCCEECCCCCCCCC SRLGEAGPVPAAGEEAAAGAIGQVQERVAQAIAHGTRQLRVRLEPPDLGVVDVRIREIAG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEHHHHHHHHC RLEVTLAANQPEVRQALEAGRESLRASLAAGGFAVQRVEVQPLTMASGQNGISGSQSGMG CEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECEEEECCCCCCCCCCCCCCC WPGGQQGASSDPGWARPERTALDQLPVVGDSRGRVRQESSGLVDTWA CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHCCCCCCCCC >Mature Secondary Structure MVLPVVSTPNGVHERAGPRPGDLGSDAQAFLAILATLLGLVPTGEEGPGNGLMPADASAA CEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC EGRTRELTHRLEESVMPDSMLFGVAQAGLVLAGVASTDGQMKGQSHGERRSDTPRLGTVF CCHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH AAGMVPSELGVLTGLAGTLSVDDGQASAVIGEPAIAQQSASLLEYAQSSGQAALGEPASG HHCCCHHHHHHHHCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC AVQAGDEGQPKGWQGPTVGALLQHTAAGAGGPVALDEAGRAAAHRIAHRVEPVGGSEGVG CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCC VTPERGSEAVQRVPAGVRVWVEEQASDGRGQALTVATERRVRHDDRPALAGALPVSDTPG CCCCCCHHHHHHCCCCEEEEEECCCCCCCCCEEEEEHHHHHCCCCCCCCEECCCCCCCCC SRLGEAGPVPAAGEEAAAGAIGQVQERVAQAIAHGTRQLRVRLEPPDLGVVDVRIREIAG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEHHHHHHHHC RLEVTLAANQPEVRQALEAGRESLRASLAAGGFAVQRVEVQPLTMASGQNGISGSQSGMG CEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECEEEECCCCCCCCCCCCCCC WPGGQQGASSDPGWARPERTALDQLPVVGDSRGRVRQESSGLVDTWA CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA