| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635993
Identifier: 221635993
GI number: 221635993
Start: 578251
End: 579186
Strand: Reverse
Name: 221635993
Synonym: trd_A0587
Alternate gene names: NA
Gene position: 579186-578251 (Counterclockwise)
Preceding gene: 221635994
Following gene: 221635992
Centisome position: 63.11
GC content: 65.6
Gene sequence:
>936_bases GTGGAGCGGACACGAGCGTTTCTCGAGCGGCTGGGCTTGCCACGGGGTGATCTCCATGATCTGCCGACCAGCACCAAGCG CTTTCCCGACGGGGCGCAGTATCGGATCGAGATTCCGAGTACCGAGGGACCGCGTGTTCTCGCCGCCGTGATCGAGGAAG CCAAGCGGCACGGTATCGTCGTCCACCGAATCTCGCAGGGAAGCGGCGTGATGCTGCTGACCGACGAGGAGATCCGCGAG ATGGCGGCATTGGCAGCAGCCGAGGGCATGGAGGTGAGCCTCTTCGCGCGACCGAGTGCGGGGTGGGATATTGGTGCGAT GGCCCGTACGCCGGCCGGGGCGCTGGTGAGTGCCAAGCTGCGTGGCCAGGAGCAATTGGTGCATTGCCTGGAGGACGTGC GGCGGGCAGCAGACTTGGGTATCCGGAGCGTCCTGCTCGCTGACGAGGGAGCGCTCTGGGTGGCAAGCGAGATGCGGCGG GCCGGTGAATTACCGCGCGATATGCAGTTCAAGGTCAGCGTGCTCATGGGGGCAGCCAATCCGGCCTCGGTCGCGTTGCT GGTCCGCTTAGGAGCGGACACGTACAACGTCGTGACCGATCTCAGCTTGGCGCAGCTCGCCGCGATCCGAGCCGCGGTCG ATGTGCCTCTCGACATCTACGTGGAGGTGCCGGACGACGTAGGAGGGTTCGTTCGCCACTACGAGATCGCGGAGATCGTC CGCGTGTGCGCGCCTGTCTATCTCAAGTTCGGGCTCCGCAACGCCCCGAACATCTATCCGTCAGGGCGACATCTCGAGGA GCTGGCTGTCCAATTGGGGCGGGAGCGAGTCCGCCGAGCAGCGATCGGACTCGCTTTGTTGCACCGGTACTATCCGGACG CGGTGGGGTCGCGACCAGGAGCCGCTGGTCTGGCACTCCCGGTCGTGGACCGGTGA
Upstream 100 bases:
>100_bases TACCGTGATCATCCTTGCGGTGGCGCTGGACATCATGCAGAAGCGGCGGCGGATGCGAGTGCGACGGGCCCGCCGCTGAG TCGAAACGGGGGAGGGTCGG
Downstream 100 bases:
>100_bases GACCGCAGCGTGGGATGGACGGTCGGTGAGCGTGCCGCGTGCGACGCGCGGCGATGGAGTTCCTGCTCTTCCAGCAGGGG AGTGTGCTGGAGCGGTGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 311; Mature: 311
Protein sequence:
>311_residues MERTRAFLERLGLPRGDLHDLPTSTKRFPDGAQYRIEIPSTEGPRVLAAVIEEAKRHGIVVHRISQGSGVMLLTDEEIRE MAALAAAEGMEVSLFARPSAGWDIGAMARTPAGALVSAKLRGQEQLVHCLEDVRRAADLGIRSVLLADEGALWVASEMRR AGELPRDMQFKVSVLMGAANPASVALLVRLGADTYNVVTDLSLAQLAAIRAAVDVPLDIYVEVPDDVGGFVRHYEIAEIV RVCAPVYLKFGLRNAPNIYPSGRHLEELAVQLGRERVRRAAIGLALLHRYYPDAVGSRPGAAGLALPVVDR
Sequences:
>Translated_311_residues MERTRAFLERLGLPRGDLHDLPTSTKRFPDGAQYRIEIPSTEGPRVLAAVIEEAKRHGIVVHRISQGSGVMLLTDEEIRE MAALAAAEGMEVSLFARPSAGWDIGAMARTPAGALVSAKLRGQEQLVHCLEDVRRAADLGIRSVLLADEGALWVASEMRR AGELPRDMQFKVSVLMGAANPASVALLVRLGADTYNVVTDLSLAQLAAIRAAVDVPLDIYVEVPDDVGGFVRHYEIAEIV RVCAPVYLKFGLRNAPNIYPSGRHLEELAVQLGRERVRRAAIGLALLHRYYPDAVGSRPGAAGLALPVVDR >Mature_311_residues MERTRAFLERLGLPRGDLHDLPTSTKRFPDGAQYRIEIPSTEGPRVLAAVIEEAKRHGIVVHRISQGSGVMLLTDEEIRE MAALAAAEGMEVSLFARPSAGWDIGAMARTPAGALVSAKLRGQEQLVHCLEDVRRAADLGIRSVLLADEGALWVASEMRR AGELPRDMQFKVSVLMGAANPASVALLVRLGADTYNVVTDLSLAQLAAIRAAVDVPLDIYVEVPDDVGGFVRHYEIAEIV RVCAPVYLKFGLRNAPNIYPSGRHLEELAVQLGRERVRRAAIGLALLHRYYPDAVGSRPGAAGLALPVVDR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33718; Mature: 33718
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERTRAFLERLGLPRGDLHDLPTSTKRFPDGAQYRIEIPSTEGPRVLAAVIEEAKRHGIV CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEE VHRISQGSGVMLLTDEEIREMAALAAAEGMEVSLFARPSAGWDIGAMARTPAGALVSAKL EEEECCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEHHH RGQEQLVHCLEDVRRAADLGIRSVLLADEGALWVASEMRRAGELPRDMQFKVSVLMGAAN CCHHHHHHHHHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC PASVALLVRLGADTYNVVTDLSLAQLAAIRAAVDVPLDIYVEVPDDVGGFVRHYEIAEIV CHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH RVCAPVYLKFGLRNAPNIYPSGRHLEELAVQLGRERVRRAAIGLALLHRYYPDAVGSRPG HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC AAGLALPVVDR CCCEEECCCCC >Mature Secondary Structure MERTRAFLERLGLPRGDLHDLPTSTKRFPDGAQYRIEIPSTEGPRVLAAVIEEAKRHGIV CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEE VHRISQGSGVMLLTDEEIREMAALAAAEGMEVSLFARPSAGWDIGAMARTPAGALVSAKL EEEECCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEHHH RGQEQLVHCLEDVRRAADLGIRSVLLADEGALWVASEMRRAGELPRDMQFKVSVLMGAAN CCHHHHHHHHHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC PASVALLVRLGADTYNVVTDLSLAQLAAIRAAVDVPLDIYVEVPDDVGGFVRHYEIAEIV CHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH RVCAPVYLKFGLRNAPNIYPSGRHLEELAVQLGRERVRRAAIGLALLHRYYPDAVGSRPG HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC AAGLALPVVDR CCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA