| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635897
Identifier: 221635897
GI number: 221635897
Start: 479935
End: 481725
Strand: Reverse
Name: 221635897
Synonym: trd_A0491
Alternate gene names: NA
Gene position: 481725-479935 (Counterclockwise)
Preceding gene: 221635898
Following gene: 221635896
Centisome position: 52.49
GC content: 71.58
Gene sequence:
>1791_bases ATGCAACGATCCGACATGCGCGCTTGGGCACGCCCGCGTGCTGGTGCCGCGCTCGTGCTCGTCCTCCTGCTCGCGCTTGG GGCGGCGCTGGCGGCACGCGACCGGCTGGCCGTTGCTGCTCCCCCGGGCCAGGCGCTCTTAGTCTCGCTGGCTGGCCCAG CGGGGACGGAGATCGCCATCCTCGACCTCACGACCGGCGCCGAGCTGAACCGGGTGCCCCACCCGGACCGGGCCTACCGG GAGATCTCCCTCTCGCCGGACGGTCGCCGGGCAGCGGTCGTGCGCAGCGAGCCGGATACGCTGGCCGGCCAGGTGCTCGA GATCCGCTCGCTCCCCGATTGGACGCTGGAGGCCGTCCTGCCGCTCGGGCTGCAGGCTCCCCCGCTCGCTGACCTGGCGA CCCGCGAGCCGGAACTGCTGGCCAACCCCTGGCTCGCCTCGGCCGCCTTTTCCGCTGACGGGAAGCTGGCCGCGCTCGCC TTCTACGGTGGGAGCGGTCCCATCCCCCAGCTCATCGTCACCGCCTACGATCTGGAGAAGCGAACATGGGCTTCCTGGGC GAAGGGCCTGGGCGGGACCAGTTACGTGTGGCTCTTCCCCAGCCGCGAGCGGTTGCTCGTGGTCAACCGCTCCGTCCTGC CGCAGTGGACCAACTCGTTGGGGGACGTCTTCGCCCTCGACCCGCAGACCGGCCGAGTGCTCGCCCAGCAGGCCATCCCG CGGCTGATCACCGCCTACCTGCCGGTACGCGGGCAGAGCGCGCCGAGCATGGCGCCCGGTCTCGCAGCCCCCGTGCTGGT CGGCAACCAGCTCTGGCTGGTCACTGACGACCTCGCACGCCTGATCCTCGATCCGCGCACGCTGGAGATCCGCTCCGCCG ACCCGCCGCTCACCCGCGATCTGGCAGCGCAGTTCGTGGCACTCGCCGGTGACTGGCTGGTCGCGTTCTCCACGGAAGCC TCCGAGCTACTGGCCATCGATGCTGCTTCTTGGCAGCTGACCGCGACGCACCGGCTTCCGGAGGAGGGCTTCCCCTACCG CTGGCACCTGGTCGGTTCTGACCCGGCGCAGCACGCCGTGTACCTCGCTGATATAGCCGAGGGTTGCCTGTGGCGCTTCC CGCTCGACAGCGGGACACTCTCGGCACCGCTGGCTTGCGGGCTCTACCTGGAGTTTGCGTACGTCACCTACTATCACTGG CCGGCGTTCTCCCCGGGCACAGCTGCACCGCTGGGCGCGATTGGCCTGCTCCGGCACCTTCCCGAATCGCTCGCCGGCAC CGCGACCGCCCTGCTCGCCGGTACCTTCCTCGTCGCCGCGCTGGGCAAGATCGTCTCCCTCGGGCGTCTCGCGCACCTGG TCGCGACCGTTTTGCCGCGGTTCCGCCGTTGGGCTCGCCCGGCTGCGCTCGGAACCGTCGCGCTGGAACTCCTCACCGGA GTCCTCTTGCTCCTACCAGGCACCCAGCGCGCTGGGCTCGTGCTCGCCGCGACCGCTCTCCTCGCCTTCACCGCGTTCGC CGTCGTCGGAGCCCGGCGTGCGCCGGGTGCGGACTGTTCCTGCTTCGGCAACCTGGTGCCCAGTAAGCTCGGCCGCGCCA CCGTGCTCCGCAACCTGGTCCTGCTCGCGCTCGTCGCGGTAGGCTGGCCAGCGACGGCCGCGCCGTCCCCGCCCGATCTC GCCATCGCCGCCGGCCTGCTGCTGGCAGTGCTCGCGGTGTCGCGCCTCGTGGCCGCGGCGGCCAGTTTGCGCCGGCTCTC GCCGGGGACGGAGCCGCGGCATGCTGCCTGA
Upstream 100 bases:
>100_bases CGACCTCAAAACAATTGGTGTGGAACAGGCAGCGTCGTGTGCACGCGAGCGGTTCTCGTCGGAACCTGCTGAGCTCTGGC CGAGCGAAAGGAGGCCCCTG
Downstream 100 bases:
>100_bases GTGGGCCGTCACGACCAGCCTGCTCGGCGCTTGGCTCGCTCTCCTCGGGCTGGCAGTGGTCCTCGCCCGGCTGGCCCAGC GCCTCCAAGCGCTTCACCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 596; Mature: 596
Protein sequence:
>596_residues MQRSDMRAWARPRAGAALVLVLLLALGAALAARDRLAVAAPPGQALLVSLAGPAGTEIAILDLTTGAELNRVPHPDRAYR EISLSPDGRRAAVVRSEPDTLAGQVLEIRSLPDWTLEAVLPLGLQAPPLADLATREPELLANPWLASAAFSADGKLAALA FYGGSGPIPQLIVTAYDLEKRTWASWAKGLGGTSYVWLFPSRERLLVVNRSVLPQWTNSLGDVFALDPQTGRVLAQQAIP RLITAYLPVRGQSAPSMAPGLAAPVLVGNQLWLVTDDLARLILDPRTLEIRSADPPLTRDLAAQFVALAGDWLVAFSTEA SELLAIDAASWQLTATHRLPEEGFPYRWHLVGSDPAQHAVYLADIAEGCLWRFPLDSGTLSAPLACGLYLEFAYVTYYHW PAFSPGTAAPLGAIGLLRHLPESLAGTATALLAGTFLVAALGKIVSLGRLAHLVATVLPRFRRWARPAALGTVALELLTG VLLLLPGTQRAGLVLAATALLAFTAFAVVGARRAPGADCSCFGNLVPSKLGRATVLRNLVLLALVAVGWPATAAPSPPDL AIAAGLLLAVLAVSRLVAAAASLRRLSPGTEPRHAA
Sequences:
>Translated_596_residues MQRSDMRAWARPRAGAALVLVLLLALGAALAARDRLAVAAPPGQALLVSLAGPAGTEIAILDLTTGAELNRVPHPDRAYR EISLSPDGRRAAVVRSEPDTLAGQVLEIRSLPDWTLEAVLPLGLQAPPLADLATREPELLANPWLASAAFSADGKLAALA FYGGSGPIPQLIVTAYDLEKRTWASWAKGLGGTSYVWLFPSRERLLVVNRSVLPQWTNSLGDVFALDPQTGRVLAQQAIP RLITAYLPVRGQSAPSMAPGLAAPVLVGNQLWLVTDDLARLILDPRTLEIRSADPPLTRDLAAQFVALAGDWLVAFSTEA SELLAIDAASWQLTATHRLPEEGFPYRWHLVGSDPAQHAVYLADIAEGCLWRFPLDSGTLSAPLACGLYLEFAYVTYYHW PAFSPGTAAPLGAIGLLRHLPESLAGTATALLAGTFLVAALGKIVSLGRLAHLVATVLPRFRRWARPAALGTVALELLTG VLLLLPGTQRAGLVLAATALLAFTAFAVVGARRAPGADCSCFGNLVPSKLGRATVLRNLVLLALVAVGWPATAAPSPPDL AIAAGLLLAVLAVSRLVAAAASLRRLSPGTEPRHAA >Mature_596_residues MQRSDMRAWARPRAGAALVLVLLLALGAALAARDRLAVAAPPGQALLVSLAGPAGTEIAILDLTTGAELNRVPHPDRAYR EISLSPDGRRAAVVRSEPDTLAGQVLEIRSLPDWTLEAVLPLGLQAPPLADLATREPELLANPWLASAAFSADGKLAALA FYGGSGPIPQLIVTAYDLEKRTWASWAKGLGGTSYVWLFPSRERLLVVNRSVLPQWTNSLGDVFALDPQTGRVLAQQAIP RLITAYLPVRGQSAPSMAPGLAAPVLVGNQLWLVTDDLARLILDPRTLEIRSADPPLTRDLAAQFVALAGDWLVAFSTEA SELLAIDAASWQLTATHRLPEEGFPYRWHLVGSDPAQHAVYLADIAEGCLWRFPLDSGTLSAPLACGLYLEFAYVTYYHW PAFSPGTAAPLGAIGLLRHLPESLAGTATALLAGTFLVAALGKIVSLGRLAHLVATVLPRFRRWARPAALGTVALELLTG VLLLLPGTQRAGLVLAATALLAFTAFAVVGARRAPGADCSCFGNLVPSKLGRATVLRNLVLLALVAVGWPATAAPSPPDL AIAAGLLLAVLAVSRLVAAAASLRRLSPGTEPRHAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62743; Mature: 62743
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRSDMRAWARPRAGAALVLVLLLALGAALAARDRLAVAAPPGQALLVSLAGPAGTEIAI CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCEEEE LDLTTGAELNRVPHPDRAYREISLSPDGRRAAVVRSEPDTLAGQVLEIRSLPDWTLEAVL EEECCCCCCCCCCCCCCHHHEEECCCCCCEEEEEECCCCHHHHHHHEECCCCCHHHHHHH PLGLQAPPLADLATREPELLANPWLASAAFSADGKLAALAFYGGSGPIPQLIVTAYDLEK CCCCCCCCCHHHHCCCCHHHCCCCHHHHEECCCCCEEEEEEECCCCCCHHHHHHHHHHHH RTWASWAKGLGGTSYVWLFPSRERLLVVNRSVLPQWTNSLGDVFALDPQTGRVLAQQAIP HHHHHHHCCCCCCEEEEEECCCCEEEEECCHHCHHHHHCCCCEEEECCCHHHHHHHHHHH RLITAYLPVRGQSAPSMAPGLAAPVLVGNQLWLVTDDLARLILDPRTLEIRSADPPLTRD HHHHHHCCCCCCCCCCCCCCCCCCEEECCEEEEEEHHHHHHHCCCCEEEEECCCCCHHHH LAAQFVALAGDWLVAFSTEASELLAIDAASWQLTATHRLPEEGFPYRWHLVGSDPAQHAV HHHHHHHHCCCEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCHHHHH YLADIAEGCLWRFPLDSGTLSAPLACGLYLEFAYVTYYHWPAFSPGTAAPLGAIGLLRHL HHHHHHCCCEEECCCCCCCCCCCHHHHHHHHEEEHEEEECCCCCCCCCCHHHHHHHHHHH PESLAGTATALLAGTFLVAALGKIVSLGRLAHLVATVLPRFRRWARPAALGTVALELLTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH VLLLLPGTQRAGLVLAATALLAFTAFAVVGARRAPGADCSCFGNLVPSKLGRATVLRNLV HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LLALVAVGWPATAAPSPPDLAIAAGLLLAVLAVSRLVAAAASLRRLSPGTEPRHAA HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MQRSDMRAWARPRAGAALVLVLLLALGAALAARDRLAVAAPPGQALLVSLAGPAGTEIAI CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCEEEE LDLTTGAELNRVPHPDRAYREISLSPDGRRAAVVRSEPDTLAGQVLEIRSLPDWTLEAVL EEECCCCCCCCCCCCCCHHHEEECCCCCCEEEEEECCCCHHHHHHHEECCCCCHHHHHHH PLGLQAPPLADLATREPELLANPWLASAAFSADGKLAALAFYGGSGPIPQLIVTAYDLEK CCCCCCCCCHHHHCCCCHHHCCCCHHHHEECCCCCEEEEEEECCCCCCHHHHHHHHHHHH RTWASWAKGLGGTSYVWLFPSRERLLVVNRSVLPQWTNSLGDVFALDPQTGRVLAQQAIP HHHHHHHCCCCCCEEEEEECCCCEEEEECCHHCHHHHHCCCCEEEECCCHHHHHHHHHHH RLITAYLPVRGQSAPSMAPGLAAPVLVGNQLWLVTDDLARLILDPRTLEIRSADPPLTRD HHHHHHCCCCCCCCCCCCCCCCCCEEECCEEEEEEHHHHHHHCCCCEEEEECCCCCHHHH LAAQFVALAGDWLVAFSTEASELLAIDAASWQLTATHRLPEEGFPYRWHLVGSDPAQHAV HHHHHHHHCCCEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCHHHHH YLADIAEGCLWRFPLDSGTLSAPLACGLYLEFAYVTYYHWPAFSPGTAAPLGAIGLLRHL HHHHHHCCCEEECCCCCCCCCCCHHHHHHHHEEEHEEEECCCCCCCCCCHHHHHHHHHHH PESLAGTATALLAGTFLVAALGKIVSLGRLAHLVATVLPRFRRWARPAALGTVALELLTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH VLLLLPGTQRAGLVLAATALLAFTAFAVVGARRAPGADCSCFGNLVPSKLGRATVLRNLV HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LLALVAVGWPATAAPSPPDLAIAAGLLLAVLAVSRLVAAAASLRRLSPGTEPRHAA HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA