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The map label for this gene is 221635894

Identifier: 221635894

GI number: 221635894

Start: 477954

End: 478697

Strand: Reverse

Name: 221635894

Synonym: trd_A0488

Alternate gene names: NA

Gene position: 478697-477954 (Counterclockwise)

Preceding gene: 221635895

Following gene: 221635893

Centisome position: 52.16

GC content: 71.24

Gene sequence:

>744_bases
ATGCGGTCCAGCGTGACTCCAGCCCGGCTCAGTCTCGTCCTGCTCCTCGTCCTCCCGTCGCTCGGCTACCTGCTCCTCGA
CGACCGGCCGGCACCACCGCACCTCTTCCTCCACCGGATACCGCCACCGCTGCTCCACGCCGGCCGCCGGAGACGGCCAC
CGCAGGAACCCCCTGATCCCGCCGAGCCCGCTCAGCCAGAGCAATCCCCGTCCCGAAGCGCTCCCGACGACACCCTCTTC
GCTGGTCTCTACGGCGAGCATGTGGAACACCTGCGAGCCTACTTGCGCCGCCTCGGTGTGCCGCCTTCCCTCCATGACGA
CCTGATCCAGGAAACGTTCGCGCGCGCCTGGGCAGCTCGCGCCCAGCTGCGCGACCGCGCAGCGCTGACCACCTGGCTCA
ACCGGATCGCCCAGCGCTGCTGGTTCGACTGGTTGCGCGCCCAACAGCTGGAGTATCGGGCGTTCGGCCGTGTACTCCGC
GAGGCCTGCCCCCGAGCCGCCGAGGATTGGTCGGCCGACCGCCTGCTCGTGGAGCAGGCGCTGGCGAAGCTCCGCGACCG
TGACCGGGAGATCCTCTACCTCCGCTGGGAGGCCGAGCTCGGGTTCGACGAGATCGCCGACCTCCTCGGTATCTCCCCCA
CCGCCGCCCAGCGCCGCGCGCACCGTGCGCTCGTGCGACTGCGGCAGGCGCTCGCCCAACGAGACCCAACGGGTGGCACC
GGTGGTGCCCCCGCTCCCTCCTGA

Upstream 100 bases:

>100_bases
CTGGCACGAGCGGGACCAGTGGCTCTGGCTTTGGTCTGTGCAGGCCTCCTGCTGTACACTGCGCGTACGCCCCCCTGACC
GGAGAGAAGGAAACCGAGCT

Downstream 100 bases:

>100_bases
ACGGCCGAGCGCTCCGGGCGTGTCGAGCCGGTGGCACAGTGGTAGTTCCCTCTACCAGGTCACATGTTACACTCCACGCA
CGGTCGGACGACCCGGATGT

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MRSSVTPARLSLVLLLVLPSLGYLLLDDRPAPPHLFLHRIPPPLLHAGRRRRPPQEPPDPAEPAQPEQSPSRSAPDDTLF
AGLYGEHVEHLRAYLRRLGVPPSLHDDLIQETFARAWAARAQLRDRAALTTWLNRIAQRCWFDWLRAQQLEYRAFGRVLR
EACPRAAEDWSADRLLVEQALAKLRDRDREILYLRWEAELGFDEIADLLGISPTAAQRRAHRALVRLRQALAQRDPTGGT
GGAPAPS

Sequences:

>Translated_247_residues
MRSSVTPARLSLVLLLVLPSLGYLLLDDRPAPPHLFLHRIPPPLLHAGRRRRPPQEPPDPAEPAQPEQSPSRSAPDDTLF
AGLYGEHVEHLRAYLRRLGVPPSLHDDLIQETFARAWAARAQLRDRAALTTWLNRIAQRCWFDWLRAQQLEYRAFGRVLR
EACPRAAEDWSADRLLVEQALAKLRDRDREILYLRWEAELGFDEIADLLGISPTAAQRRAHRALVRLRQALAQRDPTGGT
GGAPAPS
>Mature_247_residues
MRSSVTPARLSLVLLLVLPSLGYLLLDDRPAPPHLFLHRIPPPLLHAGRRRRPPQEPPDPAEPAQPEQSPSRSAPDDTLF
AGLYGEHVEHLRAYLRRLGVPPSLHDDLIQETFARAWAARAQLRDRAALTTWLNRIAQRCWFDWLRAQQLEYRAFGRVLR
EACPRAAEDWSADRLLVEQALAKLRDRDREILYLRWEAELGFDEIADLLGISPTAAQRRAHRALVRLRQALAQRDPTGGT
GGAPAPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27955; Mature: 27955

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSVTPARLSLVLLLVLPSLGYLLLDDRPAPPHLFLHRIPPPLLHAGRRRRPPQEPPDP
CCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCC
AEPAQPEQSPSRSAPDDTLFAGLYGEHVEHLRAYLRRLGVPPSLHDDLIQETFARAWAAR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AQLRDRAALTTWLNRIAQRCWFDWLRAQQLEYRAFGRVLREACPRAAEDWSADRLLVEQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHH
LAKLRDRDREILYLRWEAELGFDEIADLLGISPTAAQRRAHRALVRLRQALAQRDPTGGT
HHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
GGAPAPS
CCCCCCC
>Mature Secondary Structure
MRSSVTPARLSLVLLLVLPSLGYLLLDDRPAPPHLFLHRIPPPLLHAGRRRRPPQEPPDP
CCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCC
AEPAQPEQSPSRSAPDDTLFAGLYGEHVEHLRAYLRRLGVPPSLHDDLIQETFARAWAAR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AQLRDRAALTTWLNRIAQRCWFDWLRAQQLEYRAFGRVLREACPRAAEDWSADRLLVEQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHH
LAKLRDRDREILYLRWEAELGFDEIADLLGISPTAAQRRAHRALVRLRQALAQRDPTGGT
HHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
GGAPAPS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA