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The map label for this gene is ydbO [H]

Identifier: 221635709

GI number: 221635709

Start: 285971

End: 287281

Strand: Reverse

Name: ydbO [H]

Synonym: trd_A0302

Alternate gene names: 221635709

Gene position: 287281-285971 (Counterclockwise)

Preceding gene: 221635716

Following gene: 221635707

Centisome position: 31.3

GC content: 66.67

Gene sequence:

>1311_bases
GTGAGCGGTCGAGCGCGTCGTCTCTCGGCGTTCCTGCGCCGTTGCCGCCGTGACGAATCGGTACCGGTAACCGCTCGAGA
CGGGACTGCCCAGTGCGACCCAACTCCCGCGCGCGATCTCACCCAAGCGAGCCGAGCCTCTCCCGCTCGCGCCAGGGCAG
GCCGATCGCCGTTTCGTCCATTCAGCAGGATCGAGCAGTGCACGCCGGGCAGGTGCGAATCGATCCGGCCGCACTCCCAA
CCCCGCCGCGAGCGCTGTCGGGAGCGGCGAGCCTCGGCCGATCAGCATTCCCAGTTTTGCCAGCGTGAATTCATCGTTTG
CTCTTCTCCGCGCCCAGTCGCCCCGCGTAGAGTTACTCCGAGCGGTGAGCAGCGCGCGACGGCACGGATGGAAAGGATCG
TGCAGCGTTCCTCGCGAACCCGATCGATCAAACGCACGCTGGTGACCGTGCTCGTGCTCAATCTCACGGTCGCGATCGCC
AAGCTCGTGGTCGGCTTCGTTTCCGGCAGCCTCTCCATCTTGGCTGATGGTCTGAACTCCCTGCTCGATGCCTCAGCGAA
CATTGTCGGACTCGTCGGCATGGCCATCGCGGCGCGCCCGCCCGATCCCGACCACCCCTACGGGCACCGGCGCTTCGAGG
CGCTGACCTCGCTGGTCATCGCGGGCGCGATGGGTCTCCTGGTCGTGCAAATTCTCCAGGACGCCTGGCATCGTCTCCAG
GAACGCGTTCAACCAGAAGTCACTCCCCTTTCCTTCGCCGTCATGCTGGTCACGCTGCTCGTGAATATCGGCGTCAGCAC
GTGGGAACGCCGGCGCGGGCGCGAGCTCCACAGCTCGATCCTGAGCGCCGACGCCAAGCATACGGCTGCCGATGCACTCG
TCTCGCTCGCCGTCATCGGTGGGCTGGTGGCTGTCCGTGCCGGTTACGCCATCGTCGATCCGCTCCTGGCGATCGGCATC
GCTGGTGTGATCGCCTGGGGCGCCTGGACGATCATTCGGGATGCCGCGCTCACCCTCTCCGACGCCGCTGTGGTTCCAGT
CGAGGTGATCGAGCACGCCGTGCGGGGCGTGCCCGGCGTCCGGGGTGTCCACAACATTCGCACGCGCGGCGGCGACGGTC
TCGTCTGGGTCGATCTCCATATCCAAGTCGACCCGGAACTGAGTGTCCGCATGGCCCACGAGATCGCCAGCGAAGTGGCG
CGCATGGTCGAGCAGACCATCGGTCAGGCCGCCGATGTCACCGTGCACGTCGAGCCGGCGCTCCCCGAACACTTGCGCGT
CACCCGCGGCTACCGTGTCTGGACCGAATGA

Upstream 100 bases:

>100_bases
CTCGAGTTCCGAAATAGCTGGCCTGGGGGAACATGGTCGATACGGCTCGTTTTGGACCGACTCCGCACGTCGCAATCCAC
AACCCGAGCACGGTTAGCGC

Downstream 100 bases:

>100_bases
CCGCTCCGCTCCGCGGACGCCGCCAGGCCACCGCTCCAGCGCACCGTTCGATGAGCCAGCGTGGTATGATGATAGAGCAT
CGACCCCTTCGAGACGATCA

Product: cation diffusion facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSGRARRLSAFLRRCRRDESVPVTARDGTAQCDPTPARDLTQASRASPARARAGRSPFRPFSRIEQCTPGRCESIRPHSQ
PRRERCRERRASADQHSQFCQREFIVCSSPRPVAPRRVTPSGEQRATARMERIVQRSSRTRSIKRTLVTVLVLNLTVAIA
KLVVGFVSGSLSILADGLNSLLDASANIVGLVGMAIAARPPDPDHPYGHRRFEALTSLVIAGAMGLLVVQILQDAWHRLQ
ERVQPEVTPLSFAVMLVTLLVNIGVSTWERRRGRELHSSILSADAKHTAADALVSLAVIGGLVAVRAGYAIVDPLLAIGI
AGVIAWGAWTIIRDAALTLSDAAVVPVEVIEHAVRGVPGVRGVHNIRTRGGDGLVWVDLHIQVDPELSVRMAHEIASEVA
RMVEQTIGQAADVTVHVEPALPEHLRVTRGYRVWTE

Sequences:

>Translated_436_residues
MSGRARRLSAFLRRCRRDESVPVTARDGTAQCDPTPARDLTQASRASPARARAGRSPFRPFSRIEQCTPGRCESIRPHSQ
PRRERCRERRASADQHSQFCQREFIVCSSPRPVAPRRVTPSGEQRATARMERIVQRSSRTRSIKRTLVTVLVLNLTVAIA
KLVVGFVSGSLSILADGLNSLLDASANIVGLVGMAIAARPPDPDHPYGHRRFEALTSLVIAGAMGLLVVQILQDAWHRLQ
ERVQPEVTPLSFAVMLVTLLVNIGVSTWERRRGRELHSSILSADAKHTAADALVSLAVIGGLVAVRAGYAIVDPLLAIGI
AGVIAWGAWTIIRDAALTLSDAAVVPVEVIEHAVRGVPGVRGVHNIRTRGGDGLVWVDLHIQVDPELSVRMAHEIASEVA
RMVEQTIGQAADVTVHVEPALPEHLRVTRGYRVWTE
>Mature_435_residues
SGRARRLSAFLRRCRRDESVPVTARDGTAQCDPTPARDLTQASRASPARARAGRSPFRPFSRIEQCTPGRCESIRPHSQP
RRERCRERRASADQHSQFCQREFIVCSSPRPVAPRRVTPSGEQRATARMERIVQRSSRTRSIKRTLVTVLVLNLTVAIAK
LVVGFVSGSLSILADGLNSLLDASANIVGLVGMAIAARPPDPDHPYGHRRFEALTSLVIAGAMGLLVVQILQDAWHRLQE
RVQPEVTPLSFAVMLVTLLVNIGVSTWERRRGRELHSSILSADAKHTAADALVSLAVIGGLVAVRAGYAIVDPLLAIGIA
GVIAWGAWTIIRDAALTLSDAAVVPVEVIEHAVRGVPGVRGVHNIRTRGGDGLVWVDLHIQVDPELSVRMAHEIASEVAR
MVEQTIGQAADVTVHVEPALPEHLRVTRGYRVWTE

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]

Homologues:

Organism=Escherichia coli, GI1790349, Length=275, Percent_Identity=27.6363636363636, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1786966, Length=238, Percent_Identity=28.9915966386555, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002524 [H]

Pfam domain/function: PF01545 Cation_efflux [H]

EC number: NA

Molecular weight: Translated: 47570; Mature: 47438

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRARRLSAFLRRCRRDESVPVTARDGTAQCDPTPARDLTQASRASPARARAGRSPFRP
CCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCH
FSRIEQCTPGRCESIRPHSQPRRERCRERRASADQHSQFCQREFIVCSSPRPVAPRRVTP
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCEEECCCCCCCCCCCCC
SGEQRATARMERIVQRSSRTRSIKRTLVTVLVLNLTVAIAKLVVGFVSGSLSILADGLNS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LLDASANIVGLVGMAIAARPPDPDHPYGHRRFEALTSLVIAGAMGLLVVQILQDAWHRLQ
HHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERVQPEVTPLSFAVMLVTLLVNIGVSTWERRRGRELHSSILSADAKHTAADALVSLAVIG
HHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GLVAVRAGYAIVDPLLAIGIAGVIAWGAWTIIRDAALTLSDAAVVPVEVIEHAVRGVPGV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
RGVHNIRTRGGDGLVWVDLHIQVDPELSVRMAHEIASEVARMVEQTIGQAADVTVHVEPA
CCHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
LPEHLRVTRGYRVWTE
CCHHHHHHCCEEECCC
>Mature Secondary Structure 
SGRARRLSAFLRRCRRDESVPVTARDGTAQCDPTPARDLTQASRASPARARAGRSPFRP
CCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCH
FSRIEQCTPGRCESIRPHSQPRRERCRERRASADQHSQFCQREFIVCSSPRPVAPRRVTP
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCEEECCCCCCCCCCCCC
SGEQRATARMERIVQRSSRTRSIKRTLVTVLVLNLTVAIAKLVVGFVSGSLSILADGLNS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LLDASANIVGLVGMAIAARPPDPDHPYGHRRFEALTSLVIAGAMGLLVVQILQDAWHRLQ
HHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERVQPEVTPLSFAVMLVTLLVNIGVSTWERRRGRELHSSILSADAKHTAADALVSLAVIG
HHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GLVAVRAGYAIVDPLLAIGIAGVIAWGAWTIIRDAALTLSDAAVVPVEVIEHAVRGVPGV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
RGVHNIRTRGGDGLVWVDLHIQVDPELSVRMAHEIASEVARMVEQTIGQAADVTVHVEPA
CCHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
LPEHLRVTRGYRVWTE
CCHHHHHHCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]