| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
Click here to switch to the map view.
The map label for this gene is 221635693
Identifier: 221635693
GI number: 221635693
Start: 274365
End: 275192
Strand: Reverse
Name: 221635693
Synonym: trd_A0287
Alternate gene names: NA
Gene position: 275192-274365 (Counterclockwise)
Preceding gene: 221635694
Following gene: 221635692
Centisome position: 29.99
GC content: 69.32
Gene sequence:
>828_bases ATGCCACCACACCTGACGCGCCGCGCAATGCTCGCGACGAGCCTCACCGTCGCTGCTGGCGCTGTCGCCTTCGGCTTCTG GCAGGCCCTCCGTTCGCGTGCCGAGCTGGAGCAGCCTCCGGCTCCCCCGCTGCTCCTTCCGGAAGACCAGGCTGCGCGCG CCCGGGCGGTCGCCCAGCAGCACCCGACCGTGCAAGCGCTCGTCGGCTCCGGCGCCCGACCCGACTCGCCGGTCCAGGTC AATCCCGTCACTGGTCCGGACGGCCGGATCGTCGCCGCTGGCGTCTGGTTCCCCTTCGACGCACCGCGAACGGTCCGCGC GACCTGGGTGCACCCGGCGGACTGGGAAGTCAACTGGTCACCGACGCGCTTCGTGCAGGCGACCTATACGGTGGAGGAGG CGTGGGGCATCCTCGTCTGGGTCGATCTGGCAAGCGAGCAGGTGGTGCGGCTGGAAGCGAGCGGTCCGTACGCCCGCGTC GCACCGGACGAAGACCCGTTCGTCCTGCGGGGCGAACTCCGCGACCGCGCGATCCAGCTCGCCCTCGACGCACCGTGGCT CGCGCCGCTCCTCACCCGAGCCGAGCCGTCCGTCATGGAGCACTTGCCTGGGATCCATGACCGCCAGGGTGATCTCATCG GTGCGGTCGTCGGCTTGCAGTTCTCCGAACCGCTCGCGGTCTCCGGCACGTTTCCGGTCGTCGTGAAAGACGAGCGCGCA GACTGGGACGACGCCGAGATTCCTGAGCAGACGATCGAGCAGAAGGTATCGCTCGTCGTCGTGGTCGTCTCGTTCCGTGA CGACCGCGCACTCGGACTGTGGTATTGA
Upstream 100 bases:
>100_bases GACCGTGACAAAACTGTCATGCGTTCAGCGCTTGACAACCCGCCCCCCATTCTATACTGAGGTCAGATGACGTCCTTTCC GAAGTTCGAGGAGGTGGACG
Downstream 100 bases:
>100_bases GGTTGATGCTCGACGGCGCTGCGGAACGGAGGCACTTCCCGGTCAGCCTCCGCGTCCTCGCTCGACTCATCGACGCCTCC GGAACGCGCCCTCTGGCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MPPHLTRRAMLATSLTVAAGAVAFGFWQALRSRAELEQPPAPPLLLPEDQAARARAVAQQHPTVQALVGSGARPDSPVQV NPVTGPDGRIVAAGVWFPFDAPRTVRATWVHPADWEVNWSPTRFVQATYTVEEAWGILVWVDLASEQVVRLEASGPYARV APDEDPFVLRGELRDRAIQLALDAPWLAPLLTRAEPSVMEHLPGIHDRQGDLIGAVVGLQFSEPLAVSGTFPVVVKDERA DWDDAEIPEQTIEQKVSLVVVVVSFRDDRALGLWY
Sequences:
>Translated_275_residues MPPHLTRRAMLATSLTVAAGAVAFGFWQALRSRAELEQPPAPPLLLPEDQAARARAVAQQHPTVQALVGSGARPDSPVQV NPVTGPDGRIVAAGVWFPFDAPRTVRATWVHPADWEVNWSPTRFVQATYTVEEAWGILVWVDLASEQVVRLEASGPYARV APDEDPFVLRGELRDRAIQLALDAPWLAPLLTRAEPSVMEHLPGIHDRQGDLIGAVVGLQFSEPLAVSGTFPVVVKDERA DWDDAEIPEQTIEQKVSLVVVVVSFRDDRALGLWY >Mature_274_residues PPHLTRRAMLATSLTVAAGAVAFGFWQALRSRAELEQPPAPPLLLPEDQAARARAVAQQHPTVQALVGSGARPDSPVQVN PVTGPDGRIVAAGVWFPFDAPRTVRATWVHPADWEVNWSPTRFVQATYTVEEAWGILVWVDLASEQVVRLEASGPYARVA PDEDPFVLRGELRDRAIQLALDAPWLAPLLTRAEPSVMEHLPGIHDRQGDLIGAVVGLQFSEPLAVSGTFPVVVKDERAD WDDAEIPEQTIEQKVSLVVVVVSFRDDRALGLWY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30130; Mature: 29999
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPHLTRRAMLATSLTVAAGAVAFGFWQALRSRAELEQPPAPPLLLPEDQAARARAVAQQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHH HPTVQALVGSGARPDSPVQVNPVTGPDGRIVAAGVWFPFDAPRTVRATWVHPADWEVNWS CCCHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCEECCC PTRFVQATYTVEEAWGILVWVDLASEQVVRLEASGPYARVAPDEDPFVLRGELRDRAIQL CCEEEEEEEEEHHCCEEEEEEEECCCEEEEEECCCCEEECCCCCCCEEEECCCCCEEEEE ALDAPWLAPLLTRAEPSVMEHLPGIHDRQGDLIGAVVGLQFSEPLAVSGTFPVVVKDERA EECCCHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEEEEECCCCEEECCCEEEEEECCCC DWDDAEIPEQTIEQKVSLVVVVVSFRDDRALGLWY CCCCCCCCHHHHHHHEEEEEEEEEECCCCEEECCC >Mature Secondary Structure PPHLTRRAMLATSLTVAAGAVAFGFWQALRSRAELEQPPAPPLLLPEDQAARARAVAQQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHH HPTVQALVGSGARPDSPVQVNPVTGPDGRIVAAGVWFPFDAPRTVRATWVHPADWEVNWS CCCHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCEECCC PTRFVQATYTVEEAWGILVWVDLASEQVVRLEASGPYARVAPDEDPFVLRGELRDRAIQL CCEEEEEEEEEHHCCEEEEEEEECCCEEEEEECCCCEEECCCCCCCEEEECCCCCEEEEE ALDAPWLAPLLTRAEPSVMEHLPGIHDRQGDLIGAVVGLQFSEPLAVSGTFPVVVKDERA EECCCHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEEEEECCCCEEECCCEEEEEECCCC DWDDAEIPEQTIEQKVSLVVVVVSFRDDRALGLWY CCCCCCCCHHHHHHHEEEEEEEEEECCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA