| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635552
Identifier: 221635552
GI number: 221635552
Start: 136922
End: 137194
Strand: Reverse
Name: 221635552
Synonym: trd_A0146
Alternate gene names: NA
Gene position: 137194-136922 (Counterclockwise)
Preceding gene: 221635555
Following gene: 221635551
Centisome position: 14.95
GC content: 70.7
Gene sequence:
>273_bases GTGGCTCCGACGCTGTCTCCACCCGCTCTGCGACCGCCACCCGACTGTTCTGTCCCTTCGCCACGCTCGCTCCCTCCCGG CCTCGGCCGCTACGATCGCCCCCCACCGTCCGATCGCGCGGCGGAAGCTAGTTCCGCCCGACCGAGAACGAGCGGTACCG ATCCCTGTCGAGCTGCGCTGTCCAGCCCCGCGCCTCGACCGAGCCAGCCAGCACAGCCCGTGCCGGGAAACGGCTCAGCT GCGATGAACCAGTCGGTGCACCCGATGCGCTGA
Upstream 100 bases:
>100_bases TGGCGATGATCGTCCAAATGATCAGCCCCACGACGTTGATGCCGGCGAACGTCACGAACACCCGAAACCCCCACCCAGAG CGGAACTCGTTACCCGAAGA
Downstream 100 bases:
>100_bases GCTTCTCCCTGCCAGTGCGCCGACGCGTCCGCGTGATCTCGCCACTCTCCTGACAAAGAGCGAGGCAGAGAGCGAGATCG CCGCGGGTCCCCTCCGCGGC
Product: hydroxyproline-rich glycoprotein family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 90; Mature: 89
Protein sequence:
>90_residues MAPTLSPPALRPPPDCSVPSPRSLPPGLGRYDRPPPSDRAAEASSARPRTSGTDPCRAALSSPAPRPSQPAQPVPGNGSA AMNQSVHPMR
Sequences:
>Translated_90_residues MAPTLSPPALRPPPDCSVPSPRSLPPGLGRYDRPPPSDRAAEASSARPRTSGTDPCRAALSSPAPRPSQPAQPVPGNGSA AMNQSVHPMR >Mature_89_residues APTLSPPALRPPPDCSVPSPRSLPPGLGRYDRPPPSDRAAEASSARPRTSGTDPCRAALSSPAPRPSQPAQPVPGNGSAA MNQSVHPMR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9255; Mature: 9124
Theoretical pI: Translated: 11.56; Mature: 11.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPTLSPPALRPPPDCSVPSPRSLPPGLGRYDRPPPSDRAAEASSARPRTSGTDPCRAAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH SSPAPRPSQPAQPVPGNGSAAMNQSVHPMR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure APTLSPPALRPPPDCSVPSPRSLPPGLGRYDRPPPSDRAAEASSARPRTSGTDPCRAAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH SSPAPRPSQPAQPVPGNGSAAMNQSVHPMR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA