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The map label for this gene is yraQ [H]

Identifier: 221635469

GI number: 221635469

Start: 52101

End: 53624

Strand: Reverse

Name: yraQ [H]

Synonym: trd_A0063

Alternate gene names: 221635469

Gene position: 53624-52101 (Counterclockwise)

Preceding gene: 221635470

Following gene: 221635461

Centisome position: 5.84

GC content: 66.08

Gene sequence:

>1524_bases
TTGGCTCCTCGCCCAGGATGGCGGGCCGAGCGTGCCGCGTGGCCCCTGATCGACCCCCTAGCGACCGGTGCGGTCGCCCC
TGATTCTCCAGATCGAGAAGCGGCAAAGCGAGTCGGTTGTGCAAAGGACGATATCGTCCTGCGCACGTTCCGCGAATGGA
GGATGCAGATGAGTGGTGCGGTTTCCCCGCTCGGGGCTGCACGTTCGCAGGGTCGCGTTACCACCTTCGTCCTGTCGCTC
GGTCTCTTCGTCGCGGGCCTCGCCGTCGTCCTCGCGACCGTCGTCGACATGCGGCGAGCATTTCTGCTGGAGCCTGCAGT
GTACCGGAAACTCGGTGCACCTTCCGCCTTTCTCCAGTACACGCCGTGGCATCTCCTCGTGCTCGCCATCGCGCTGGTGT
CAGCCATCGCTGCCTATCGGGTCATGCGTGGAGCGGAGCAGCAGTTCGGGGATCCGAGTGGGCTCCGTGTGGCCCGGAAC
GTGCTCGCTGGCCTGCTGATGGCCATGTTGGTCGTTGATCTCTTCGTGTACCGGATCGTCCAAGCTGAGCGGGTCGCCTC
GGCCGGGAAGGCGGGAATCGCCAAAACGTTCGCGCTCGATGCCCTGCCCACCTGGCTCCGGCCGATCGGTGAGGCAGCGA
ACTTCCTGCTCGTCGTCTGGCACGCCACGACGCTCGGTATCCTGCTCGGTGCCTTGTTCCTCGTGCTGCTCTGCGCTAGC
CCGCGCCTGCAGCGGGTGTACGAGCTGCGCGGCTTCCGCGCGCACGTCTTGGGCAGTGCCAGTGCCCTCGCCTATCCCTT
CTGCTCCTGTTGCGCCGGCCCGCTCGGTGCGAGCCTCTATCGCGGTGGCGCCTCGCTCGAGTCGTCCCTCGCTTTCGTCG
TCGCTGCCCCGCTCCTCAACGTGACCACCCTCTTTCTGGCGACAACGCTTCTTCCAGCTGACTTCGCCCTCCTCCGCATC
GTCGGTGGTATCGCGCTCGCGGTCTTCGGTACCTGGCTGGTCGCGCTTGCAGTGCGGCGTCGCCCACCAGTGCTCGTCGA
GGCGGGGACTGCTGGTCGAGGTATCCGCTGGCTGGAGCGCCTGACCAGTTTCTTCGCGTTCGAACGGCATCTTGCTGGGC
GCCGAATCGACACGCCGACGGAATTGATTGCAGCCTGGCTCCGCACGACCTGGGTGATCGCTCGCGTGGCGATTCCCATG
CTCTTCATCGCGGCAGCCGTGGTCGGCTGGGCTGCGCCGATCCTGACGGCACTGGGTGGTGGCAACACGGTCGGCACGGT
GCTCTTCGCTACGCTGGTCGGTGTCCTCTTCATGATCCCGACCTGGACCGAGCTGGCGATCGCCGCCCCGCTCATCCAGC
AAGGGATGACCGGTCCGGCTGCTGCGCTGCTCCTGGCGCTGCCAGCGGTCAGCCTGCCGAGCGTGCTCATCTATGGGGCA
GCCTTGCGCGATTGGCGTGTTCCGGCTCTCATGGTGATCGTCGTGGCAGCGGTCAGCATCGTGGCTGGTCTTCTCTTCTT
GTGA

Upstream 100 bases:

>100_bases
GAAAGTTCGGTTACGCTTTCCGCAACCGTTCGGTGATGATTTTCGTACGAGCGACGATGCAAGAACACGGCGGGAACCGC
TATCGGACCCCAGGACGCGC

Downstream 100 bases:

>100_bases
TAGCGTCTGGCCCCCAACCGTCGGCAGGCACGCTCTGCACCGAGCGTGGGCAGGGCGTGCCTTGCCGACGATACGGCGGT
GCGGGATCGCGAAGTTGACG

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MAPRPGWRAERAAWPLIDPLATGAVAPDSPDREAAKRVGCAKDDIVLRTFREWRMQMSGAVSPLGAARSQGRVTTFVLSL
GLFVAGLAVVLATVVDMRRAFLLEPAVYRKLGAPSAFLQYTPWHLLVLAIALVSAIAAYRVMRGAEQQFGDPSGLRVARN
VLAGLLMAMLVVDLFVYRIVQAERVASAGKAGIAKTFALDALPTWLRPIGEAANFLLVVWHATTLGILLGALFLVLLCAS
PRLQRVYELRGFRAHVLGSASALAYPFCSCCAGPLGASLYRGGASLESSLAFVVAAPLLNVTTLFLATTLLPADFALLRI
VGGIALAVFGTWLVALAVRRRPPVLVEAGTAGRGIRWLERLTSFFAFERHLAGRRIDTPTELIAAWLRTTWVIARVAIPM
LFIAAAVVGWAAPILTALGGGNTVGTVLFATLVGVLFMIPTWTELAIAAPLIQQGMTGPAAALLLALPAVSLPSVLIYGA
ALRDWRVPALMVIVVAAVSIVAGLLFL

Sequences:

>Translated_507_residues
MAPRPGWRAERAAWPLIDPLATGAVAPDSPDREAAKRVGCAKDDIVLRTFREWRMQMSGAVSPLGAARSQGRVTTFVLSL
GLFVAGLAVVLATVVDMRRAFLLEPAVYRKLGAPSAFLQYTPWHLLVLAIALVSAIAAYRVMRGAEQQFGDPSGLRVARN
VLAGLLMAMLVVDLFVYRIVQAERVASAGKAGIAKTFALDALPTWLRPIGEAANFLLVVWHATTLGILLGALFLVLLCAS
PRLQRVYELRGFRAHVLGSASALAYPFCSCCAGPLGASLYRGGASLESSLAFVVAAPLLNVTTLFLATTLLPADFALLRI
VGGIALAVFGTWLVALAVRRRPPVLVEAGTAGRGIRWLERLTSFFAFERHLAGRRIDTPTELIAAWLRTTWVIARVAIPM
LFIAAAVVGWAAPILTALGGGNTVGTVLFATLVGVLFMIPTWTELAIAAPLIQQGMTGPAAALLLALPAVSLPSVLIYGA
ALRDWRVPALMVIVVAAVSIVAGLLFL
>Mature_506_residues
APRPGWRAERAAWPLIDPLATGAVAPDSPDREAAKRVGCAKDDIVLRTFREWRMQMSGAVSPLGAARSQGRVTTFVLSLG
LFVAGLAVVLATVVDMRRAFLLEPAVYRKLGAPSAFLQYTPWHLLVLAIALVSAIAAYRVMRGAEQQFGDPSGLRVARNV
LAGLLMAMLVVDLFVYRIVQAERVASAGKAGIAKTFALDALPTWLRPIGEAANFLLVVWHATTLGILLGALFLVLLCASP
RLQRVYELRGFRAHVLGSASALAYPFCSCCAGPLGASLYRGGASLESSLAFVVAAPLLNVTTLFLATTLLPADFALLRIV
GGIALAVFGTWLVALAVRRRPPVLVEAGTAGRGIRWLERLTSFFAFERHLAGRRIDTPTELIAAWLRTTWVIARVAIPML
FIAAAVVGWAAPILTALGGGNTVGTVLFATLVGVLFMIPTWTELAIAAPLIQQGMTGPAAALLLALPAVSLPSVLIYGAA
LRDWRVPALMVIVVAAVSIVAGLLFL

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

Organism=Escherichia coli, GI1789541, Length=303, Percent_Identity=31.6831683168317, Blast_Score=101, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 53864; Mature: 53733

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
APRPGWRAERAAWPLIDPLATGAVAPDSPDREAAKRVGCAKDDIVLRTFREWRMQMSGA
CCCCCCCCHHCCCCCHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCC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HHHHCCHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]