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The map label for this gene is yvrE [H]

Identifier: 221633919

GI number: 221633919

Start: 1965158

End: 1966039

Strand: Reverse

Name: yvrE [H]

Synonym: trd_1946

Alternate gene names: 221633919

Gene position: 1966039-1965158 (Counterclockwise)

Preceding gene: 221633922

Following gene: 221633918

Centisome position: 98.15

GC content: 61.34

Gene sequence:

>882_bases
GTGCAAGGGGTGAGCGAGCTAGAGCTGGTCGCAGACTACTCCTGCGTGGTCGGGGAAGGTCCGCTCTGGCACCCGATCGA
GCAGTGTGTGTACTGGATCGATATCGCCGATGGCCGACTCTTCCGTTACGAGCCAGCGACGGGAACACATGCACTCGTCT
ACGGGCCAGGGGAGCCGATCGGCGGCTTCACTATCCAAGAAGATGGAGCGCTGCTCCTGTTCATGGCGCGCGGCGCGATC
CGCCTCTGGCGTCAAGGAGTGGTCGAAACCCTCATCGACGAGCTGCCAGCGGAGCGGCACACGCGGTTCAACGACGTCGT
GGCCGATCCCTTGGGAGGTGTCTTCTGTGGTACCATGGCGACACCGGATCGCCCTGGGCGACTCTACCGGATCGATCCGG
ATGGATCTCTCCGGGTCATCCTCAATCGGGTGGGTATCCCGAACGGGATGGATTTCTCTCCTGACCTTCGCACGTTCTAC
TTTACCGACTCGACCGATCGCACGATCTATGCTTTCGATTACGACGGTATGACCGGCAGCGTGTCGAACCAGCGAGCGCT
CATCGTCATTCCTGAAGGAGAAGGAGTCCCTGACGGTCTCACCGTGGATACCAAAGGGTGTCTCTGGTCAGCGCGCTGGG
ATGGTGGCGCAGTGTACCGCTATTCTCCGACCGGCGAGCTGCTCAGCCGCTTCTCGCTCCCCGCACGCAAGGTTTCGAGC
GTGACGTTCGGGGGAGCGGGATACTCCGATCTGTACATCACGACGGCAGGAGGGGATCGCAAGGAGACAGAGGGATGGGG
TGCCGGAGGACTCTTCCGGTTGCGCGCGCCTGTTTTGGGTCGTGCCCCATTTCTGAGTCGGATCACCACAGTACAGTTGT
GA

Upstream 100 bases:

>100_bases
GTCATCGTTCCCCCTCGGCGATGGCTGCCGCTCTACGCTGTCAGAAGCCTCGACAACAGCTCGTGGCCGGATTCTAATCA
TAGGAGGAGGCAGGAAAGGG

Downstream 100 bases:

>100_bases
AGACGCGCTGTGCGCCTTCGGCCGACTGCTTCTGATCGCCAAAGCTCATCTGTTCCCAGCGCTGTGTTCTAGCCCAAAAC
TCTTCGTGTAGACTCTTACG

Product: Senescence marker protein-30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MQGVSELELVADYSCVVGEGPLWHPIEQCVYWIDIADGRLFRYEPATGTHALVYGPGEPIGGFTIQEDGALLLFMARGAI
RLWRQGVVETLIDELPAERHTRFNDVVADPLGGVFCGTMATPDRPGRLYRIDPDGSLRVILNRVGIPNGMDFSPDLRTFY
FTDSTDRTIYAFDYDGMTGSVSNQRALIVIPEGEGVPDGLTVDTKGCLWSARWDGGAVYRYSPTGELLSRFSLPARKVSS
VTFGGAGYSDLYITTAGGDRKETEGWGAGGLFRLRAPVLGRAPFLSRITTVQL

Sequences:

>Translated_293_residues
MQGVSELELVADYSCVVGEGPLWHPIEQCVYWIDIADGRLFRYEPATGTHALVYGPGEPIGGFTIQEDGALLLFMARGAI
RLWRQGVVETLIDELPAERHTRFNDVVADPLGGVFCGTMATPDRPGRLYRIDPDGSLRVILNRVGIPNGMDFSPDLRTFY
FTDSTDRTIYAFDYDGMTGSVSNQRALIVIPEGEGVPDGLTVDTKGCLWSARWDGGAVYRYSPTGELLSRFSLPARKVSS
VTFGGAGYSDLYITTAGGDRKETEGWGAGGLFRLRAPVLGRAPFLSRITTVQL
>Mature_293_residues
MQGVSELELVADYSCVVGEGPLWHPIEQCVYWIDIADGRLFRYEPATGTHALVYGPGEPIGGFTIQEDGALLLFMARGAI
RLWRQGVVETLIDELPAERHTRFNDVVADPLGGVFCGTMATPDRPGRLYRIDPDGSLRVILNRVGIPNGMDFSPDLRTFY
FTDSTDRTIYAFDYDGMTGSVSNQRALIVIPEGEGVPDGLTVDTKGCLWSARWDGGAVYRYSPTGELLSRFSLPARKVSS
VTFGGAGYSDLYITTAGGDRKETEGWGAGGLFRLRAPVLGRAPFLSRITTVQL

Specific function: Unknown

COG id: COG3386

COG function: function code G; Gluconolactonase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SMP-30/CGR1 family [H]

Homologues:

Organism=Homo sapiens, GI23111021, Length=293, Percent_Identity=32.7645051194539, Blast_Score=157, Evalue=9e-39,
Organism=Homo sapiens, GI4759036, Length=293, Percent_Identity=32.7645051194539, Blast_Score=157, Evalue=9e-39,
Organism=Drosophila melanogaster, GI24641471, Length=271, Percent_Identity=33.5793357933579, Blast_Score=145, Evalue=3e-35,
Organism=Drosophila melanogaster, GI18860103, Length=271, Percent_Identity=33.5793357933579, Blast_Score=145, Evalue=3e-35,
Organism=Drosophila melanogaster, GI24641469, Length=271, Percent_Identity=33.5793357933579, Blast_Score=145, Evalue=3e-35,
Organism=Drosophila melanogaster, GI45551448, Length=271, Percent_Identity=33.5793357933579, Blast_Score=145, Evalue=3e-35,
Organism=Drosophila melanogaster, GI24646912, Length=271, Percent_Identity=31.7343173431734, Blast_Score=136, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24646910, Length=271, Percent_Identity=31.7343173431734, Blast_Score=136, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011042
- InterPro:   IPR013658
- InterPro:   IPR005511 [H]

Pfam domain/function: PF08450 SGL [H]

EC number: NA

Molecular weight: Translated: 32013; Mature: 32013

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGVSELELVADYSCVVGEGPLWHPIEQCVYWIDIADGRLFRYEPATGTHALVYGPGEPI
CCCHHHHHEEECCEEEECCCCCCCHHHHEEEEEEECCCEEEEECCCCCCEEEEECCCCCC
GGFTIQEDGALLLFMARGAIRLWRQGVVETLIDELPAERHTRFNDVVADPLGGVFCGTMA
CCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHCCCCCEEECCCC
TPDRPGRLYRIDPDGSLRVILNRVGIPNGMDFSPDLRTFYFTDSTDRTIYAFDYDGMTGS
CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC
VSNQRALIVIPEGEGVPDGLTVDTKGCLWSARWDGGAVYRYSPTGELLSRFSLPARKVSS
CCCCEEEEEEECCCCCCCCEEEECCCCEEEEECCCCEEEEECCCHHHHHHHCCCCHHHCE
VTFGGAGYSDLYITTAGGDRKETEGWGAGGLFRLRAPVLGRAPFLSRITTVQL
EEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHEEEECC
>Mature Secondary Structure
MQGVSELELVADYSCVVGEGPLWHPIEQCVYWIDIADGRLFRYEPATGTHALVYGPGEPI
CCCHHHHHEEECCEEEECCCCCCCHHHHEEEEEEECCCEEEEECCCCCCEEEEECCCCCC
GGFTIQEDGALLLFMARGAIRLWRQGVVETLIDELPAERHTRFNDVVADPLGGVFCGTMA
CCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHCCCCCEEECCCC
TPDRPGRLYRIDPDGSLRVILNRVGIPNGMDFSPDLRTFYFTDSTDRTIYAFDYDGMTGS
CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC
VSNQRALIVIPEGEGVPDGLTVDTKGCLWSARWDGGAVYRYSPTGELLSRFSLPARKVSS
CCCCEEEEEEECCCCCCCCEEEECCCCEEEEECCCCEEEEECCCHHHHHHHCCCCHHHCE
VTFGGAGYSDLYITTAGGDRKETEGWGAGGLFRLRAPVLGRAPFLSRITTVQL
EEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]