| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221633541
Identifier: 221633541
GI number: 221633541
Start: 1550620
End: 1551093
Strand: Reverse
Name: 221633541
Synonym: trd_1564
Alternate gene names: NA
Gene position: 1551093-1550620 (Counterclockwise)
Preceding gene: 221633542
Following gene: 221633537
Centisome position: 77.44
GC content: 64.77
Gene sequence:
>474_bases ATGCCGCGCATCGTGGCCGATCTCGTCGATGTCTATGTTTTCCGTCGTCTGCCGCAGCGTCCCGCCCACGAGGTACAGTT CCTCCTGTTGCGTCGCCGCGAAGATGCGCCGCTCGGCGGAACGTGGCACGCTGTCCATGGGCGGATTTTGCCGAACGAGC GTGCGCTCGACGCAGCGGCGCGCGAACTCCTGGAGCAGACTGGGCTGGTGCCACAGAAACTCTACTCGGCGGACTACATC GCCCAATTCTACGATCATGCCAGCGACGCAATCGTTCTCGCCCCTGCCTTCGCCGCGCTGGTCGAGCCGCGGGCAGCTGT CCGGTTGTCGCAAGCCCATGACGACTACGCCTGGTGTGATCTCGACGAGGCAGTCGCTCGCTTGCTCTGGACCAGTCAGC GCTGGGCCGTGCGGCACATCCATGCCGTGATCGCCTGCGGGGGAGAGGAAGCGGAGTACTACGCTCTCACCTAG
Upstream 100 bases:
>100_bases GACATCGCTGGTGAGCTTCTTCCGGTGACGTGCTATCCTCGCTCTGTACGTCGGGGGACGACCGGCTCTCGCCGGGCCAG TGCGGAGGATATGGGGAACG
Downstream 100 bases:
>100_bases ACCTCTTCCAGGCTATCGCGGATGACATCGAAGTATTCCAGCGCCAGCCCGGTGCCGATGGCGACACAGCTGAGGGGATC ATCGGCGACGAAGCAGGGGA
Product: lipoyltransferase
Products: NA
Alternate protein names: NUDIX Hydrolase Protein; NUDIX Domain-Containing Protein; Nucleoside Polyphosphate Hydrolase Protein; Lipoyltransferase; Hydrolase NUDIX Family Protein
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MPRIVADLVDVYVFRRLPQRPAHEVQFLLLRRREDAPLGGTWHAVHGRILPNERALDAAARELLEQTGLVPQKLYSADYI AQFYDHASDAIVLAPAFAALVEPRAAVRLSQAHDDYAWCDLDEAVARLLWTSQRWAVRHIHAVIACGGEEAEYYALT
Sequences:
>Translated_157_residues MPRIVADLVDVYVFRRLPQRPAHEVQFLLLRRREDAPLGGTWHAVHGRILPNERALDAAARELLEQTGLVPQKLYSADYI AQFYDHASDAIVLAPAFAALVEPRAAVRLSQAHDDYAWCDLDEAVARLLWTSQRWAVRHIHAVIACGGEEAEYYALT >Mature_156_residues PRIVADLVDVYVFRRLPQRPAHEVQFLLLRRREDAPLGGTWHAVHGRILPNERALDAAARELLEQTGLVPQKLYSADYIA QFYDHASDAIVLAPAFAALVEPRAAVRLSQAHDDYAWCDLDEAVARLLWTSQRWAVRHIHAVIACGGEEAEYYALT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17739; Mature: 17608
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRIVADLVDVYVFRRLPQRPAHEVQFLLLRRREDAPLGGTWHAVHGRILPNERALDAAA CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCEECCCHHHHHHHH RELLEQTGLVPQKLYSADYIAQFYDHASDAIVLAPAFAALVEPRAAVRLSQAHDDYAWCD HHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCC LDEAVARLLWTSQRWAVRHIHAVIACGGEEAEYYALT HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECC >Mature Secondary Structure PRIVADLVDVYVFRRLPQRPAHEVQFLLLRRREDAPLGGTWHAVHGRILPNERALDAAA CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCEECCCHHHHHHHH RELLEQTGLVPQKLYSADYIAQFYDHASDAIVLAPAFAALVEPRAAVRLSQAHDDYAWCD HHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCC LDEAVARLLWTSQRWAVRHIHAVIACGGEEAEYYALT HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA