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The map label for this gene is degS [H]

Identifier: 221633434

GI number: 221633434

Start: 1444362

End: 1445426

Strand: Reverse

Name: degS [H]

Synonym: trd_1456

Alternate gene names: 221633434

Gene position: 1445426-1444362 (Counterclockwise)

Preceding gene: 221633435

Following gene: 221633433

Centisome position: 72.16

GC content: 67.42

Gene sequence:

>1065_bases
ATGACCGGTGAGCGGACCGGCGTGAGCTTCACCGAGGAGTTGCGCAGCACGGTGGAGCGCTGTCGTGCCGAACTGGGCGA
GACGGGGCGCTCGCTTGAAGAGATCGAGCTGCTGTTGGCACAGACTGCTGCCGAGGTGGAGCGGCTCAGCCAGCGCGAAA
TCCAGCTCAGCGCCCGGCTGCGCGAGGTCGAGAGTAACCTGGAAGCGTACCCGCGCAGCGAGATCCGCGATGCCTATCGG
ACCGTTCACGAGGCGACGCTGCGACTCTTCATGCTCCGCAATCAGATGGAGCAACTGGAGGAGCGTCGCCAGAGCCTTTC
GCTCTACCAGGAACGCCTGCGCGAGCTGCTCTTGCTCGCCGAGAGCCAGCTGCGAGCAGTGACCGAGCGCGAGCGTGGCG
GTGACCGGCGGACGCGCCTCTTGGGTAGCACAGGCCAGCTGGCCAGCCCTCTGGACATTCTGGCAGCTGCCGAACGAGAG
CGGATGCTGATCCGCCGGACGCTGGAGCACGAGCTCGTGCAGCTCATGAGTGCGGTCGCACTGCAAGTGGAGATCTGCCT
CCAGGTCGAGCGCAAGCGGGCCGATGACTTGCGTCCCGAACTCCTGCGGCTACGCGAGTTGACCAGCGAAGCAGTGCATG
GGTTGCGACGCACGCTGCTCGAGTTGGCGCCGAGCCTCCTGGAAGAGATCGGGCTCGTGGAGACGCTCCGTCGCTATCTC
CGCGAGTTAGCCCGGATAAGCCGACTGGAGCGCGTGGCGGTCACCGGGCCGGAGCAGGATGCGAGGCTCGCGCCTCCCCT
GTCGCACCTGGTCTATCGCCTGCTGCAGGAACTGGCGGTGCGGGCAGCTCGTCAGCCGGGCGTGACGGATCTCGCGGTGG
AGCTGCGTGTCGAGTCGGCCCAGCTGGTAGCGGTTCTGGAAGCTGGTGGTCCAGCGGCGCTCGATCCCCTGCCGCCGCTC
GATCCGCTGGTCACGGAACGGCTGGAGCAGCTGGGTGCCAGTCTGGCCGAGGAAGCGATCGCGGCGGAGCGCTGGCGCGG
GACGCTCCTCGTGCCCCTTACCTGA

Upstream 100 bases:

>100_bases
AGCCGAGCGGGAGAACGGCTCAGCTGGGGACTTCTTTCCTAGGCACCCTGCCTTGTCGGCGGTCGATCGTCTCGCTAGAG
TGAGCGTCGGGGAGGCGACG

Downstream 100 bases:

>100_bases
GTCCTGATTCTGTCTCGCGCGCTGGCCAGGATGTTCTCCCCCGATCGGGTCGCGCCGAAGTTCCCCACTCCAGTCGAGAC
GACTGCACCTACGAGCCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MTGERTGVSFTEELRSTVERCRAELGETGRSLEEIELLLAQTAAEVERLSQREIQLSARLREVESNLEAYPRSEIRDAYR
TVHEATLRLFMLRNQMEQLEERRQSLSLYQERLRELLLLAESQLRAVTERERGGDRRTRLLGSTGQLASPLDILAAAERE
RMLIRRTLEHELVQLMSAVALQVEICLQVERKRADDLRPELLRLRELTSEAVHGLRRTLLELAPSLLEEIGLVETLRRYL
RELARISRLERVAVTGPEQDARLAPPLSHLVYRLLQELAVRAARQPGVTDLAVELRVESAQLVAVLEAGGPAALDPLPPL
DPLVTERLEQLGASLAEEAIAAERWRGTLLVPLT

Sequences:

>Translated_354_residues
MTGERTGVSFTEELRSTVERCRAELGETGRSLEEIELLLAQTAAEVERLSQREIQLSARLREVESNLEAYPRSEIRDAYR
TVHEATLRLFMLRNQMEQLEERRQSLSLYQERLRELLLLAESQLRAVTERERGGDRRTRLLGSTGQLASPLDILAAAERE
RMLIRRTLEHELVQLMSAVALQVEICLQVERKRADDLRPELLRLRELTSEAVHGLRRTLLELAPSLLEEIGLVETLRRYL
RELARISRLERVAVTGPEQDARLAPPLSHLVYRLLQELAVRAARQPGVTDLAVELRVESAQLVAVLEAGGPAALDPLPPL
DPLVTERLEQLGASLAEEAIAAERWRGTLLVPLT
>Mature_353_residues
TGERTGVSFTEELRSTVERCRAELGETGRSLEEIELLLAQTAAEVERLSQREIQLSARLREVESNLEAYPRSEIRDAYRT
VHEATLRLFMLRNQMEQLEERRQSLSLYQERLRELLLLAESQLRAVTERERGGDRRTRLLGSTGQLASPLDILAAAERER
MLIRRTLEHELVQLMSAVALQVEICLQVERKRADDLRPELLRLRELTSEAVHGLRRTLLELAPSLLEEIGLVETLRRYLR
ELARISRLERVAVTGPEQDARLAPPLSHLVYRLLQELAVRAARQPGVTDLAVELRVESAQLVAVLEAGGPAALDPLPPLD
PLVTERLEQLGASLAEEAIAAERWRGTLLVPLT

Specific function: Member of the two-component regulatory system degS/degU. Involved in a sensory transduction pathway that affect the production of enzymes that degrade polymeric carbon and nitrogen sources. DegS probably acts as a kinase that phosphorylates degU [H]

COG id: COG4585

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR008595
- InterPro:   IPR011712
- InterPro:   IPR005467
- InterPro:   IPR016381 [H]

Pfam domain/function: PF05384 DegS; PF02518 HATPase_c; PF07730 HisKA_3 [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 40091; Mature: 39960

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGERTGVSFTEELRSTVERCRAELGETGRSLEEIELLLAQTAAEVERLSQREIQLSARL
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REVESNLEAYPRSEIRDAYRTVHEATLRLFMLRNQMEQLEERRQSLSLYQERLRELLLLA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESQLRAVTERERGGDRRTRLLGSTGQLASPLDILAAAERERMLIRRTLEHELVQLMSAVA
HHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQVEICLQVERKRADDLRPELLRLRELTSEAVHGLRRTLLELAPSLLEEIGLVETLRRYL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RELARISRLERVAVTGPEQDARLAPPLSHLVYRLLQELAVRAARQPGVTDLAVELRVESA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEECHH
QLVAVLEAGGPAALDPLPPLDPLVTERLEQLGASLAEEAIAAERWRGTLLVPLT
HHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure 
TGERTGVSFTEELRSTVERCRAELGETGRSLEEIELLLAQTAAEVERLSQREIQLSARL
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REVESNLEAYPRSEIRDAYRTVHEATLRLFMLRNQMEQLEERRQSLSLYQERLRELLLLA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESQLRAVTERERGGDRRTRLLGSTGQLASPLDILAAAERERMLIRRTLEHELVQLMSAVA
HHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQVEICLQVERKRADDLRPELLRLRELTSEAVHGLRRTLLELAPSLLEEIGLVETLRRYL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RELARISRLERVAVTGPEQDARLAPPLSHLVYRLLQELAVRAARQPGVTDLAVELRVESA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEECHH
QLVAVLEAGGPAALDPLPPLDPLVTERLEQLGASLAEEAIAAERWRGTLLVPLT
HHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3141378; 3141377; 9384377; 3136143 [H]