| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633417
Identifier: 221633417
GI number: 221633417
Start: 1430761
End: 1432548
Strand: Reverse
Name: 221633417
Synonym: trd_1439
Alternate gene names: NA
Gene position: 1432548-1430761 (Counterclockwise)
Preceding gene: 221633424
Following gene: 221633412
Centisome position: 71.52
GC content: 66.89
Gene sequence:
>1788_bases ATGCACAGGAGTCCTTTGGGCAACCAGGTACGGCTCGGCGTGCTTCTCGTCCTGCTCCTCGCTCTTGCGCTGCCGCTCCT CCCAGCGCGGGCGCAAGTGACGACCGACGGGTGGAGCGGCACGGTAGAGCCGTGCGGGAACGGCTTCGCGACCCAGACCT TCGGCCCTGGTCCGGCCTCGCCACCGCACGGAACGGGCAGTCTCCAATTTTCGGTCGCCGCTGTGGATGACGGGAAGGTC TGGTCGCAGTTCGTGCAGCGGGGGGTTGTCGAAACTCCCCTGACCGCGATCAGCGAGCTCCGCTACTGGACCTTCGTGAG CCGGGGCGCCGGCCATGCGCCGCACCTCTTCCTCGATGTCGATCTGAACGGGGACGGGGTGGCCGACGATCGCCTGATCT ACCAGCCCGAGCTCAATGGGACGGTTACCCCGCTCACCTGGCAGGAGTGGAGTGCCGCCGGTGGGCGCTGGTGGTCGCAG CGAGGGTTGGGGGGATTGCTGCAGGGCGCACCGGGGCTGCTGACGAGCTATGCGCTGGCTTTTCCGAATGCGCGACTCGC GCTACCGGAAGGAGGTCAAGGTGGGCTCGGTATCGGCGTCGGCTGCTTGGGCAGCGGGTGGGGAGGCTGGCAGGGAGCGG TCGACGCCCTCGTATTCCGGGCCGGGACGCTTTCGTTCTTCTGGGACTTCGAGGCCACCGGCGTAGTGACGACCCGCGGA GGCGGGGTACGGGAAGGGCCCACCTTCCGCGACCTGCGTCCGGCACCCTGGTCGACAGTGGCGCCGGGGCCGGTGACCAT CGCCGTGACGGCGACCACTCCGAGCGGCCTGCGTTCCGTCCGCTTGTCGCTCGATGGTCGGGAACTACCGGTCACGGAGA GCGGTGACCGCAACACCCGGACCGTCAGCACGCAGCTCACGCTCCAACCCGGCTTTTTCGTCGTCACGGCCATCGCGACC GACGAGCTGGGCCGGAGCTTCACCGCCCAGTGGCAGTTCGTCGTGTCGCCCGATCCGCGAGACAGCTGGTGGTTCAGGGC CGACGGGACACCACGGCAGCAGCAGATCACTGCCTCCCTGCGGGCGCTCAGCGAAGCGTTCCGCTGGCACTTCTTCGGTT ACTCCTGGGATGGAGCCTATCACCCGGAAATGCCGACCCATGCCTCGGTCGCCTCCACACTGCGCGTAGTGACGCGCTCG CCCATGCACTTCGGGACACTGTCGCCGACCGAGCCGATCATGATCTCGGCCGCAGTCGTCTCGAGCGAGAGCCCGCTCGC CAGCGTCGAACTCACGCTCAACGGTCAGCCGCTCGACGTAGAGATTTCCCGCGACGACGAGCGGCGCTGGCTGGTCTACG CGATACGAACGCTGAGCCCTGGTACCTATGGAGTGACTGCGACGGTCCGCGACACGGCCGGCCGTCGTTTCACGACCGTG TGGGGCTTCGTCGTCTCCAGCGATGCTAACGAGAATCCCTGGTTCTATCCGGATGGCCGCATGAAAGCCGAAGTGGTGAC GCGTACCTTGCGGACGCTGGTCGAGGGCTGGCGCTGGCATACGCGCGGACAGTCGTGGGATGGCAAACCCCACCCGGAGT TCCCGACGCATTCCACCGGCGTGAGCGGTGCAGAACCGTTGCCGCAGTGGTTCGATGCCCAAGGACGCCCGAACCAGCAA GCGATCAGCGACACGCTGCGCATGCTCGAGCAAGAGTTCCGCTGGCACTTCTGGGGAATCAGCTGGGACGGCAATCGCCA TCCCGAGATTCCGACGCATGCCGATTGA
Upstream 100 bases:
>100_bases CTTGCCAGGCGAGAAGAGGTCGGCTAGGCTAGGGGGGACATCTCCCTCACGAGGGATGGACCGCGCGCATCGCTGGAGCG CGGGAAGGGGAGGGTGATCG
Downstream 100 bases:
>100_bases GACAGCGGGCAACGAGCGGGGGTCGTCAGTCGACCGACGACCCCCGCTCCGCGTCGTGCGTGGACGGCCGGTTCTACGGA CTCAGGCGGTAATTGGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Trypsin Domain Protein
Number of amino acids: Translated: 595; Mature: 595
Protein sequence:
>595_residues MHRSPLGNQVRLGVLLVLLLALALPLLPARAQVTTDGWSGTVEPCGNGFATQTFGPGPASPPHGTGSLQFSVAAVDDGKV WSQFVQRGVVETPLTAISELRYWTFVSRGAGHAPHLFLDVDLNGDGVADDRLIYQPELNGTVTPLTWQEWSAAGGRWWSQ RGLGGLLQGAPGLLTSYALAFPNARLALPEGGQGGLGIGVGCLGSGWGGWQGAVDALVFRAGTLSFFWDFEATGVVTTRG GGVREGPTFRDLRPAPWSTVAPGPVTIAVTATTPSGLRSVRLSLDGRELPVTESGDRNTRTVSTQLTLQPGFFVVTAIAT DELGRSFTAQWQFVVSPDPRDSWWFRADGTPRQQQITASLRALSEAFRWHFFGYSWDGAYHPEMPTHASVASTLRVVTRS PMHFGTLSPTEPIMISAAVVSSESPLASVELTLNGQPLDVEISRDDERRWLVYAIRTLSPGTYGVTATVRDTAGRRFTTV WGFVVSSDANENPWFYPDGRMKAEVVTRTLRTLVEGWRWHTRGQSWDGKPHPEFPTHSTGVSGAEPLPQWFDAQGRPNQQ AISDTLRMLEQEFRWHFWGISWDGNRHPEIPTHAD
Sequences:
>Translated_595_residues MHRSPLGNQVRLGVLLVLLLALALPLLPARAQVTTDGWSGTVEPCGNGFATQTFGPGPASPPHGTGSLQFSVAAVDDGKV WSQFVQRGVVETPLTAISELRYWTFVSRGAGHAPHLFLDVDLNGDGVADDRLIYQPELNGTVTPLTWQEWSAAGGRWWSQ RGLGGLLQGAPGLLTSYALAFPNARLALPEGGQGGLGIGVGCLGSGWGGWQGAVDALVFRAGTLSFFWDFEATGVVTTRG GGVREGPTFRDLRPAPWSTVAPGPVTIAVTATTPSGLRSVRLSLDGRELPVTESGDRNTRTVSTQLTLQPGFFVVTAIAT DELGRSFTAQWQFVVSPDPRDSWWFRADGTPRQQQITASLRALSEAFRWHFFGYSWDGAYHPEMPTHASVASTLRVVTRS PMHFGTLSPTEPIMISAAVVSSESPLASVELTLNGQPLDVEISRDDERRWLVYAIRTLSPGTYGVTATVRDTAGRRFTTV WGFVVSSDANENPWFYPDGRMKAEVVTRTLRTLVEGWRWHTRGQSWDGKPHPEFPTHSTGVSGAEPLPQWFDAQGRPNQQ AISDTLRMLEQEFRWHFWGISWDGNRHPEIPTHAD >Mature_595_residues MHRSPLGNQVRLGVLLVLLLALALPLLPARAQVTTDGWSGTVEPCGNGFATQTFGPGPASPPHGTGSLQFSVAAVDDGKV WSQFVQRGVVETPLTAISELRYWTFVSRGAGHAPHLFLDVDLNGDGVADDRLIYQPELNGTVTPLTWQEWSAAGGRWWSQ RGLGGLLQGAPGLLTSYALAFPNARLALPEGGQGGLGIGVGCLGSGWGGWQGAVDALVFRAGTLSFFWDFEATGVVTTRG GGVREGPTFRDLRPAPWSTVAPGPVTIAVTATTPSGLRSVRLSLDGRELPVTESGDRNTRTVSTQLTLQPGFFVVTAIAT DELGRSFTAQWQFVVSPDPRDSWWFRADGTPRQQQITASLRALSEAFRWHFFGYSWDGAYHPEMPTHASVASTLRVVTRS PMHFGTLSPTEPIMISAAVVSSESPLASVELTLNGQPLDVEISRDDERRWLVYAIRTLSPGTYGVTATVRDTAGRRFTTV WGFVVSSDANENPWFYPDGRMKAEVVTRTLRTLVEGWRWHTRGQSWDGKPHPEFPTHSTGVSGAEPLPQWFDAQGRPNQQ AISDTLRMLEQEFRWHFWGISWDGNRHPEIPTHAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64916; Mature: 64916
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRSPLGNQVRLGVLLVLLLALALPLLPARAQVTTDGWSGTVEPCGNGFATQTFGPGPAS CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCC PPHGTGSLQFSVAAVDDGKVWSQFVQRGVVETPLTAISELRYWTFVSRGAGHAPHLFLDV CCCCCCEEEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCCEEEEEE DLNGDGVADDRLIYQPELNGTVTPLTWQEWSAAGGRWWSQRGLGGLLQGAPGLLTSYALA EECCCCCCCCEEEECCCCCCEECCEEHHHHCCCCCCCHHHCCCCHHHCCCCHHHHHHHHH FPNARLALPEGGQGGLGIGVGCLGSGWGGWQGAVDALVFRAGTLSFFWDFEATGVVTTRG CCCCEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEECC GGVREGPTFRDLRPAPWSTVAPGPVTIAVTATTPSGLRSVRLSLDGRELPVTESGDRNTR CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCE TVSTQLTLQPGFFVVTAIATDELGRSFTAQWQFVVSPDPRDSWWFRADGTPRQQQITASL EEEEEEEECCCEEEEEEEEHHHHCCCEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHH RALSEAFRWHFFGYSWDGAYHPEMPTHASVASTLRVVTRSPMHFGTLSPTEPIMISAAVV HHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE SSESPLASVELTLNGQPLDVEISRDDERRWLVYAIRTLSPGTYGVTATVRDTAGRRFTTV CCCCCCEEEEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCEEEEE WGFVVSSDANENPWFYPDGRMKAEVVTRTLRTLVEGWRWHTRGQSWDGKPHPEFPTHSTG EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCC VSGAEPLPQWFDAQGRPNQQAISDTLRMLEQEFRWHFWGISWDGNRHPEIPTHAD CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MHRSPLGNQVRLGVLLVLLLALALPLLPARAQVTTDGWSGTVEPCGNGFATQTFGPGPAS CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCC PPHGTGSLQFSVAAVDDGKVWSQFVQRGVVETPLTAISELRYWTFVSRGAGHAPHLFLDV CCCCCCEEEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCCEEEEEE DLNGDGVADDRLIYQPELNGTVTPLTWQEWSAAGGRWWSQRGLGGLLQGAPGLLTSYALA EECCCCCCCCEEEECCCCCCEECCEEHHHHCCCCCCCHHHCCCCHHHCCCCHHHHHHHHH FPNARLALPEGGQGGLGIGVGCLGSGWGGWQGAVDALVFRAGTLSFFWDFEATGVVTTRG CCCCEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEECC GGVREGPTFRDLRPAPWSTVAPGPVTIAVTATTPSGLRSVRLSLDGRELPVTESGDRNTR CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCE TVSTQLTLQPGFFVVTAIATDELGRSFTAQWQFVVSPDPRDSWWFRADGTPRQQQITASL EEEEEEEECCCEEEEEEEEHHHHCCCEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHH RALSEAFRWHFFGYSWDGAYHPEMPTHASVASTLRVVTRSPMHFGTLSPTEPIMISAAVV HHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE SSESPLASVELTLNGQPLDVEISRDDERRWLVYAIRTLSPGTYGVTATVRDTAGRRFTTV CCCCCCEEEEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCEEEEE WGFVVSSDANENPWFYPDGRMKAEVVTRTLRTLVEGWRWHTRGQSWDGKPHPEFPTHSTG EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCC VSGAEPLPQWFDAQGRPNQQAISDTLRMLEQEFRWHFWGISWDGNRHPEIPTHAD CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA