| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is hemH [H]
Identifier: 221633363
GI number: 221633363
Start: 1373112
End: 1374068
Strand: Reverse
Name: hemH [H]
Synonym: trd_1383
Alternate gene names: 221633363
Gene position: 1374068-1373112 (Counterclockwise)
Preceding gene: 221633364
Following gene: 221633362
Centisome position: 68.6
GC content: 64.89
Gene sequence:
>957_bases GTGACACGCGAGCGCGTCGCTGTCTTGCTCATGGCCTACGGAGGACCCGATCGTTTGGACGATCTTCCGGCCTTCCTCCT GGACGTCCGACACGGGCGGCCGTATTCGCCCGAACTCTTGGCTGATCTCACGGAGCGTTACCGGGCGATCGGTGGTCGTT CCCCGATCCTCGAGCGCACCCGGGCCGAGGCGCTCGGGATCGAACGAGCGTTGCAGGAGTACGCGACCGAGGATGGGGTT GACTACCGCATCTACGTGGCGATGCGACACTGGCATCCCTTCATTCGCGAGGTGGTTCCAGAGATCCTGCGCGACGGCGT CGACCGGCTCGTCGCGGTCGTGATGGCGCCTCATTACTCTCGGATGAGCGTGGGTGCTTATCTGGCACGACTGGACGAGG CGCTCCGCGACCATCAGGCGACGGTTCCTGTCCATGCGGTCGAGAGCTGGAAGGACGAGCCGGAGTTCATCGCCGCTTGG GTCGACCGGATCGCTGCGGCGCTCCGAGCCGTCCCCGAGACGGAGCGATCTCGGACGCTCTTGCTGTTCACCGCGCATAG TTTGCCGACGCGGATACTGGACTGGGGGGATCCGTACCGGGAGGAGATTCTCACCTCCGTCCGGCTGGTCGCGGCGCACT TCCCAGAATACGAGTGGCGTTTCGCTTTCCAGAGTCAGGGAGCGAGCGAGGAACCGTGGTTGGGGCCGACGGTCGAGGAG ACGCTCGACGAGTTGGCGGCTGCGGGTGTTGCGCGAGTCTTGCTGGTACCGATCGGGTTCGTCTGCGACCACGTGGAAGT GCTCTACGACGTCGATATCGCACACAAGGAGTACGCGTTGTCCCGGGGAATCGTGCTCGAGCGGCCAGCGATGTTGAACG ATCATCCCCTGCTTTGCCGAGCGATCGCGAATGCGGTGCGGCGGACGCTGCGCGCGGCGCGCGTTGGGGTAGGATGA
Upstream 100 bases:
>100_bases GCTGCCGGAGACATCGCCCGATGCGGTCGCGATCCTCGTCGAGTTCGTGCACGAGTACAGCGCCCGTGTCCGAGACTGAG TATGAGAAGGGAGGAAAACC
Downstream 100 bases:
>100_bases GCGAGGTGCACGCTCATGTGGTCGTCATCGGCGGGGGGATCGCTGGTCTCGCTGCGGCCTGGCGCCTCGAACAGCTGAGT CCGGCGATCAGCGTCACGCT
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase [H]
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MTRERVAVLLMAYGGPDRLDDLPAFLLDVRHGRPYSPELLADLTERYRAIGGRSPILERTRAEALGIERALQEYATEDGV DYRIYVAMRHWHPFIREVVPEILRDGVDRLVAVVMAPHYSRMSVGAYLARLDEALRDHQATVPVHAVESWKDEPEFIAAW VDRIAAALRAVPETERSRTLLLFTAHSLPTRILDWGDPYREEILTSVRLVAAHFPEYEWRFAFQSQGASEEPWLGPTVEE TLDELAAAGVARVLLVPIGFVCDHVEVLYDVDIAHKEYALSRGIVLERPAMLNDHPLLCRAIANAVRRTLRAARVGVG
Sequences:
>Translated_318_residues MTRERVAVLLMAYGGPDRLDDLPAFLLDVRHGRPYSPELLADLTERYRAIGGRSPILERTRAEALGIERALQEYATEDGV DYRIYVAMRHWHPFIREVVPEILRDGVDRLVAVVMAPHYSRMSVGAYLARLDEALRDHQATVPVHAVESWKDEPEFIAAW VDRIAAALRAVPETERSRTLLLFTAHSLPTRILDWGDPYREEILTSVRLVAAHFPEYEWRFAFQSQGASEEPWLGPTVEE TLDELAAAGVARVLLVPIGFVCDHVEVLYDVDIAHKEYALSRGIVLERPAMLNDHPLLCRAIANAVRRTLRAARVGVG >Mature_317_residues TRERVAVLLMAYGGPDRLDDLPAFLLDVRHGRPYSPELLADLTERYRAIGGRSPILERTRAEALGIERALQEYATEDGVD YRIYVAMRHWHPFIREVVPEILRDGVDRLVAVVMAPHYSRMSVGAYLARLDEALRDHQATVPVHAVESWKDEPEFIAAWV DRIAAALRAVPETERSRTLLLFTAHSLPTRILDWGDPYREEILTSVRLVAAHFPEYEWRFAFQSQGASEEPWLGPTVEET LDELAAAGVARVLLVPIGFVCDHVEVLYDVDIAHKEYALSRGIVLERPAMLNDHPLLCRAIANAVRRTLRAARVGVG
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=329, Percent_Identity=28.8753799392097, Blast_Score=149, Evalue=3e-36, Organism=Homo sapiens, GI60499025, Length=329, Percent_Identity=28.8753799392097, Blast_Score=149, Evalue=4e-36, Organism=Escherichia coli, GI1786681, Length=227, Percent_Identity=28.1938325991189, Blast_Score=80, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324750, Length=334, Percent_Identity=25.4491017964072, Blast_Score=129, Evalue=4e-31, Organism=Drosophila melanogaster, GI17864156, Length=330, Percent_Identity=28.4848484848485, Blast_Score=139, Evalue=4e-33, Organism=Drosophila melanogaster, GI24651774, Length=256, Percent_Identity=26.5625, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI45552018, Length=171, Percent_Identity=33.9181286549708, Blast_Score=97, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 35929; Mature: 35797
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRERVAVLLMAYGGPDRLDDLPAFLLDVRHGRPYSPELLADLTERYRAIGGRSPILERT CCCHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH RAEALGIERALQEYATEDGVDYRIYVAMRHWHPFIREVVPEILRDGVDRLVAVVMAPHYS HHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RMSVGAYLARLDEALRDHQATVPVHAVESWKDEPEFIAAWVDRIAAALRAVPETERSRTL HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEE LLFTAHSLPTRILDWGDPYREEILTSVRLVAAHFPEYEWRFAFQSQGASEEPWLGPTVEE EEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHH TLDELAAAGVARVLLVPIGFVCDHVEVLYDVDIAHKEYALSRGIVLERPAMLNDHPLLCR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHH AIANAVRRTLRAARVGVG HHHHHHHHHHHHHHCCCC >Mature Secondary Structure TRERVAVLLMAYGGPDRLDDLPAFLLDVRHGRPYSPELLADLTERYRAIGGRSPILERT CCHHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH RAEALGIERALQEYATEDGVDYRIYVAMRHWHPFIREVVPEILRDGVDRLVAVVMAPHYS HHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RMSVGAYLARLDEALRDHQATVPVHAVESWKDEPEFIAAWVDRIAAALRAVPETERSRTL HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEE LLFTAHSLPTRILDWGDPYREEILTSVRLVAAHFPEYEWRFAFQSQGASEEPWLGPTVEE EEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHH TLDELAAAGVARVLLVPIGFVCDHVEVLYDVDIAHKEYALSRGIVLERPAMLNDHPLLCR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHH AIANAVRRTLRAARVGVG HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA