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The map label for this gene is ssb [H]

Identifier: 221633230

GI number: 221633230

Start: 1233453

End: 1233908

Strand: Reverse

Name: ssb [H]

Synonym: trd_1248

Alternate gene names: 221633230

Gene position: 1233908-1233453 (Counterclockwise)

Preceding gene: 221633231

Following gene: 221633229

Centisome position: 61.6

GC content: 61.84

Gene sequence:

>456_bases
ATGTCTCGCGGACTCAATCGAATCGAACTCATCGGGAATGTCGGCCGCGACCCCGAGATGCGGTATACACCAGCCGGGGC
TCCGGTCACCGAGTTCTCGCTCGCTGTCAACTCGATGCGCCGTGGTGGTGAAGGCGGACAGCCGATCGAGGAAACCGATT
GGTTTCGGGTCATCTGCTGGAACCGATTGGCGGAGATCGCTGACCAGTACATCCGCAAGGGTACCAAGGTGTATGTTGCA
GGCCGACTCCGCGTCCGGCGCTACACCGGGAACGATGGTGTCGAGCGGACCGTCGTCGAGGTGATCGCCCGAGACCTTCT
GCTGCTGAGCCCGCGTGCGCCGGACGCACCAGCGGCGGTGCCGCCAGGCATCGTCGATGAAGAACCGGTACTTCCTGACG
TAAATGCGGACTTCCCGTTGGACGATGATCCGTGGAACGATCAGGTTCCGTTCTGA

Upstream 100 bases:

>100_bases
TCGAGCGGGAGCTGCGGTTGAACGAGCAAGTCCTGCGCCATCTGATGGTTCGTCTGGACGAATGAGTGGTCCGGCGTGGA
CCGGAGCCCGGGGGTATGCG

Downstream 100 bases:

>100_bases
GACCGTTCGAGGAGTGAGGGGACGATGGCCGAAGAACTCGAACCGATGACGGCGGATGATGGGGCGACCGAGCAGACAGC
GGAAGCGACCGGAGAGTCCG

Product: single-stranded DNA binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MSRGLNRIELIGNVGRDPEMRYTPAGAPVTEFSLAVNSMRRGGEGGQPIEETDWFRVICWNRLAEIADQYIRKGTKVYVA
GRLRVRRYTGNDGVERTVVEVIARDLLLLSPRAPDAPAAVPPGIVDEEPVLPDVNADFPLDDDPWNDQVPF

Sequences:

>Translated_151_residues
MSRGLNRIELIGNVGRDPEMRYTPAGAPVTEFSLAVNSMRRGGEGGQPIEETDWFRVICWNRLAEIADQYIRKGTKVYVA
GRLRVRRYTGNDGVERTVVEVIARDLLLLSPRAPDAPAAVPPGIVDEEPVLPDVNADFPLDDDPWNDQVPF
>Mature_150_residues
SRGLNRIELIGNVGRDPEMRYTPAGAPVTEFSLAVNSMRRGGEGGQPIEETDWFRVICWNRLAEIADQYIRKGTKVYVAG
RLRVRRYTGNDGVERTVVEVIARDLLLLSPRAPDAPAAVPPGIVDEEPVLPDVNADFPLDDDPWNDQVPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=121, Percent_Identity=33.8842975206612, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1790494, Length=101, Percent_Identity=43.5643564356436, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 16815; Mature: 16684

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRGLNRIELIGNVGRDPEMRYTPAGAPVTEFSLAVNSMRRGGEGGQPIEETDWFRVICW
CCCCCCHHHEECCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
NRLAEIADQYIRKGTKVYVAGRLRVRRYTGNDGVERTVVEVIARDLLLLSPRAPDAPAAV
HHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
PPGIVDEEPVLPDVNADFPLDDDPWNDQVPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRGLNRIELIGNVGRDPEMRYTPAGAPVTEFSLAVNSMRRGGEGGQPIEETDWFRVICW
CCCCCHHHEECCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
NRLAEIADQYIRKGTKVYVAGRLRVRRYTGNDGVERTVVEVIARDLLLLSPRAPDAPAAV
HHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
PPGIVDEEPVLPDVNADFPLDDDPWNDQVPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]