| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633104
Identifier: 221633104
GI number: 221633104
Start: 1102532
End: 1103959
Strand: Reverse
Name: 221633104
Synonym: trd_1120
Alternate gene names: NA
Gene position: 1103959-1102532 (Counterclockwise)
Preceding gene: 221633105
Following gene: 221633100
Centisome position: 55.12
GC content: 63.73
Gene sequence:
>1428_bases TTGAGCTGGCGCGCTCATCTCCTGCGCGTCGCCCTTTTCAGTCTTCCTTTCCTGGCGCTCGCGCTGGTGACGTATCGGTA CGGATTTTTGACGAATGCGCACGCGCACGTCACCGCGAAGGCCTTGCTGGCAGCCGACCGTTTGCGCTTGGAGGTCATCG GTTTCCTGTATCCGCCGCTGCCGTTCTTGCTGGTGCTCGTGTTCCCGCGGCCGTGGCTTCCGAGCGTGCTGGCGAGTATT GCGGCAGGGGCGACTGCCTGGCTCGTCTGGTACGACTTGGAACGAGTTGGATTGGCTCGCCTTTGGCGGATGCTCCTGCT GGCTGCGGTCGTCGTGATTCCTTCGAACGTCTTTCTCGCGACGCAGGCGTATCCGGACATGCTGGCGCTGCACCTGATCG TCGTGGCCTGGCACTATTACATCAATTTCGTTCGTCATGGCCACACCTTCAGCGGTTTCGTGGCAGGCCTGATACTCGGA CTCGCCTTTTACGCCAACTTCTATGCACTCGTCTATGCGCTCGCGCTGGCGAGTCTGGTACCGCTCTTTCGCCGGTCGGA AGCGAGCACGGGGCAGGGCGGGGAATGGGCTACCCTGAGCCAGATGCTGGTGACGGCTTTCCCCGCTCTCTGGGCTGTGG CGAGCTGGACCTACATCAACTGGGTTTTCACCGGTAACCCGATGATGTATCTGACGGACCCGGCCGCTGCAGTGATCGAT CCAGAGCGGTGGGGAGTGCCGCTGGCGGAACGCTGGGGTTGGCTCGCGGAGTTCGGCCGCGAACTCATCATGCAGCCGCT GCTCCTCGGAGTGTTCGCTGCCAATCTCTGGCGGGCGCCCCGACGCCTCGTACCACTCGCCGTTCTCGCGTTCGTTCCCA GTCTGTTGCGGTTTTTCGGGTTCGCCTATCCGTTGCCGCTCGTCCTTGCAACCTATACCGTCCTTGCGCTGATCGCGCTG CCGGAACGTTTGCCGCGCTGGGTGGGACCCGTCATCGTCGCGCTCGCGCTCGGACAAGGTGCGACCACGGCGGTGTTGCT GCAGCATGCAGGCGAAGTTCGGCAGTGGCAGCAGGTTCTCGTCAACGGTATCCCGCGAGCGAGCGATCAGGACGAACGGG AGCTCGGCCAGCGTTTGCGAGCGGCTCCACCGTATTCGATTCTGGCCGATGATCGGAGTGCCTATCGCATCATCGCGCGT GCGGAGACAGCCCGACCGTTCCTGCTGCCGGCCGATGCGTCCTTCGGGGCGGCGCTTGCCGAGCCGGCCCGCTCTGTCGG GTACATCCTCGTGACGCAGGAGCCGCTCGGTCGCGATCTGGTCAGCGAGCGGTTTGCAGACGGTCCGCCGGACGGCTTCG TGGTCGACGGACAGCAGGGATCATGGAAACTCTACCGGCGGATCGATCAGCCGAGTCTCCTGCACTGA
Upstream 100 bases:
>100_bases CCCTTCTACTGGGAGAAGACGCGTCATGGCCTCAGCCGTTATCTCGAAACCGGTTCCGCAGCCAGCGTCGCCGCCGAGTG ACGAGCTCCGTCTCGTCGAT
Downstream 100 bases:
>100_bases GCCGAGCAGTCGTTGCGACGCGTTCAGCTTCGTGTCCTTCGCTCCTGCTCGCTGTTCTCGAGCGGTGACCGGGGCGTCTT GCATACCCAGTCGCACTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MSWRAHLLRVALFSLPFLALALVTYRYGFLTNAHAHVTAKALLAADRLRLEVIGFLYPPLPFLLVLVFPRPWLPSVLASI AAGATAWLVWYDLERVGLARLWRMLLLAAVVVIPSNVFLATQAYPDMLALHLIVVAWHYYINFVRHGHTFSGFVAGLILG LAFYANFYALVYALALASLVPLFRRSEASTGQGGEWATLSQMLVTAFPALWAVASWTYINWVFTGNPMMYLTDPAAAVID PERWGVPLAERWGWLAEFGRELIMQPLLLGVFAANLWRAPRRLVPLAVLAFVPSLLRFFGFAYPLPLVLATYTVLALIAL PERLPRWVGPVIVALALGQGATTAVLLQHAGEVRQWQQVLVNGIPRASDQDERELGQRLRAAPPYSILADDRSAYRIIAR AETARPFLLPADASFGAALAEPARSVGYILVTQEPLGRDLVSERFADGPPDGFVVDGQQGSWKLYRRIDQPSLLH
Sequences:
>Translated_475_residues MSWRAHLLRVALFSLPFLALALVTYRYGFLTNAHAHVTAKALLAADRLRLEVIGFLYPPLPFLLVLVFPRPWLPSVLASI AAGATAWLVWYDLERVGLARLWRMLLLAAVVVIPSNVFLATQAYPDMLALHLIVVAWHYYINFVRHGHTFSGFVAGLILG LAFYANFYALVYALALASLVPLFRRSEASTGQGGEWATLSQMLVTAFPALWAVASWTYINWVFTGNPMMYLTDPAAAVID PERWGVPLAERWGWLAEFGRELIMQPLLLGVFAANLWRAPRRLVPLAVLAFVPSLLRFFGFAYPLPLVLATYTVLALIAL PERLPRWVGPVIVALALGQGATTAVLLQHAGEVRQWQQVLVNGIPRASDQDERELGQRLRAAPPYSILADDRSAYRIIAR AETARPFLLPADASFGAALAEPARSVGYILVTQEPLGRDLVSERFADGPPDGFVVDGQQGSWKLYRRIDQPSLLH >Mature_474_residues SWRAHLLRVALFSLPFLALALVTYRYGFLTNAHAHVTAKALLAADRLRLEVIGFLYPPLPFLLVLVFPRPWLPSVLASIA AGATAWLVWYDLERVGLARLWRMLLLAAVVVIPSNVFLATQAYPDMLALHLIVVAWHYYINFVRHGHTFSGFVAGLILGL AFYANFYALVYALALASLVPLFRRSEASTGQGGEWATLSQMLVTAFPALWAVASWTYINWVFTGNPMMYLTDPAAAVIDP ERWGVPLAERWGWLAEFGRELIMQPLLLGVFAANLWRAPRRLVPLAVLAFVPSLLRFFGFAYPLPLVLATYTVLALIALP ERLPRWVGPVIVALALGQGATTAVLLQHAGEVRQWQQVLVNGIPRASDQDERELGQRLRAAPPYSILADDRSAYRIIARA ETARPFLLPADASFGAALAEPARSVGYILVTQEPLGRDLVSERFADGPPDGFVVDGQQGSWKLYRRIDQPSLLH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52696; Mature: 52565
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWRAHLLRVALFSLPFLALALVTYRYGFLTNAHAHVTAKALLAADRLRLEVIGFLYPPL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHH PFLLVLVFPRPWLPSVLASIAAGATAWLVWYDLERVGLARLWRMLLLAAVVVIPSNVFLA HHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE TQAYPDMLALHLIVVAWHYYINFVRHGHTFSGFVAGLILGLAFYANFYALVYALALASLV ECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLFRRSEASTGQGGEWATLSQMLVTAFPALWAVASWTYINWVFTGNPMMYLTDPAAAVID HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCHHEEC PERWGVPLAERWGWLAEFGRELIMQPLLLGVFAANLWRAPRRLVPLAVLAFVPSLLRFFG HHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FAYPLPLVLATYTVLALIALPERLPRWVGPVIVALALGQGATTAVLLQHAGEVRQWQQVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH VNGIPRASDQDERELGQRLRAAPPYSILADDRSAYRIIARAETARPFLLPADASFGAALA HHCCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHEEEEECCCCCCEEEECCCCCCHHHH EPARSVGYILVTQEPLGRDLVSERFADGPPDGFVVDGQQGSWKLYRRIDQPSLLH HHHHHCCEEEEECCCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCCC >Mature Secondary Structure SWRAHLLRVALFSLPFLALALVTYRYGFLTNAHAHVTAKALLAADRLRLEVIGFLYPPL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHH PFLLVLVFPRPWLPSVLASIAAGATAWLVWYDLERVGLARLWRMLLLAAVVVIPSNVFLA HHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE TQAYPDMLALHLIVVAWHYYINFVRHGHTFSGFVAGLILGLAFYANFYALVYALALASLV ECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLFRRSEASTGQGGEWATLSQMLVTAFPALWAVASWTYINWVFTGNPMMYLTDPAAAVID HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCHHEEC PERWGVPLAERWGWLAEFGRELIMQPLLLGVFAANLWRAPRRLVPLAVLAFVPSLLRFFG HHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FAYPLPLVLATYTVLALIALPERLPRWVGPVIVALALGQGATTAVLLQHAGEVRQWQQVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH VNGIPRASDQDERELGQRLRAAPPYSILADDRSAYRIIARAETARPFLLPADASFGAALA HHCCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHEEEEECCCCCCEEEECCCCCCHHHH EPARSVGYILVTQEPLGRDLVSERFADGPPDGFVVDGQQGSWKLYRRIDQPSLLH HHHHHCCEEEEECCCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA