| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221632445
Identifier: 221632445
GI number: 221632445
Start: 414082
End: 414807
Strand: Reverse
Name: 221632445
Synonym: trd_0417
Alternate gene names: NA
Gene position: 414807-414082 (Counterclockwise)
Preceding gene: 221632446
Following gene: 221632444
Centisome position: 20.71
GC content: 65.56
Gene sequence:
>726_bases ATGGCCGTCTTCTGCGTTTCCTCGGAAGTCTTCGAGCAGTTTCCCGACTATTTGGTCATCGTGCTCGTCGCTGACCGAGT CGAGAACCGGCGGCACGTCGAACGAGCCCGGACACTACTCGCGGAAAGCGCCCGTCTCGCCTGCGAGCGCTGGCGAGCGA TCGACCCTAAGGCCTTGCCGGAGATCGACGTCTGGCGACGGGCATTTCGCCGGCTCGGCTGGTCCGCTAGTACGTATCAG AGTTCGGTCGAAGCGCTCGTCCGCCGGACACTGAAGGGTAACCCTCCCCCGAGCATCAACCCGGCCGTCGATCTCGCCAA TGCAGCGTCGCTCCGTTTTCTCGTCCCCATCGGCGCGCACGATCTGGCCACCGCTCCGAACGGCCTGACCGTCCGTGCGA GCCTTCCTGGCGATCGCTTCCTGCCTCTCGGTGACGGCGCACCCGAAGAGCCGGAGGTCGGAGAAATCGTGTACGTCCAT GACCACGACGTCCGGACTCGGCGCTGGGTGTGGCGCCAGAGCCGGACCGGCCTCGTCACGCCGGATTCGCGCACGATTCT CTTCCCGATCGATGCCTTTCAGGGTGTCACGGCGGCCGCTGCCGTCGCAGCCGCCGATTGGCTCAGCGAGCAACTCCAGT CACTGCTCGGTGCGACCGTGCAGCGCGGCCTCGTCGATCTGAACCAACCGGTCTTCGACTCCGCCCTCGGCGATGCAATC AGCTGA
Upstream 100 bases:
>100_bases TCGGGTCACGACAGTCGTCGCCAGGCTCTACGAGCAGGTCGCGCGCCGCGGGATCCTCCAACCATGCGGCACGACAGGAT AGAGGGAGGCGACAGACGGG
Downstream 100 bases:
>100_bases GACCGAGGCGAACACACTCGGTAGGCGATGGCCCATCGCTGACATCATCCCCTCTTGACGAGGCGTCGGAGACTTGCTAC TCTCACAAAAGGTGCGGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: B3/4 Domain-Containing Protein; Solo B3/4 Domain-Containing Protein; Cytoplasmic Protein; Phosphoenolpyruvate Synthase
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MAVFCVSSEVFEQFPDYLVIVLVADRVENRRHVERARTLLAESARLACERWRAIDPKALPEIDVWRRAFRRLGWSASTYQ SSVEALVRRTLKGNPPPSINPAVDLANAASLRFLVPIGAHDLATAPNGLTVRASLPGDRFLPLGDGAPEEPEVGEIVYVH DHDVRTRRWVWRQSRTGLVTPDSRTILFPIDAFQGVTAAAAVAAADWLSEQLQSLLGATVQRGLVDLNQPVFDSALGDAI S
Sequences:
>Translated_241_residues MAVFCVSSEVFEQFPDYLVIVLVADRVENRRHVERARTLLAESARLACERWRAIDPKALPEIDVWRRAFRRLGWSASTYQ SSVEALVRRTLKGNPPPSINPAVDLANAASLRFLVPIGAHDLATAPNGLTVRASLPGDRFLPLGDGAPEEPEVGEIVYVH DHDVRTRRWVWRQSRTGLVTPDSRTILFPIDAFQGVTAAAAVAAADWLSEQLQSLLGATVQRGLVDLNQPVFDSALGDAI S >Mature_240_residues AVFCVSSEVFEQFPDYLVIVLVADRVENRRHVERARTLLAESARLACERWRAIDPKALPEIDVWRRAFRRLGWSASTYQS SVEALVRRTLKGNPPPSINPAVDLANAASLRFLVPIGAHDLATAPNGLTVRASLPGDRFLPLGDGAPEEPEVGEIVYVHD HDVRTRRWVWRQSRTGLVTPDSRTILFPIDAFQGVTAAAAVAAADWLSEQLQSLLGATVQRGLVDLNQPVFDSALGDAIS
Specific function: Unknown
COG id: COG3382
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26513; Mature: 26382
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVFCVSSEVFEQFPDYLVIVLVADRVENRRHVERARTLLAESARLACERWRAIDPKALP CEEEEECHHHHHHCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EIDVWRRAFRRLGWSASTYQSSVEALVRRTLKGNPPPSINPAVDLANAASLRFLVPIGAH CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEEEECCH DLATAPNGLTVRASLPGDRFLPLGDGAPEEPEVGEIVYVHDHDVRTRRWVWRQSRTGLVT HHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCC PDSRTILFPIDAFQGVTAAAAVAAADWLSEQLQSLLGATVQRGLVDLNQPVFDSALGDAI CCCCEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC S C >Mature Secondary Structure AVFCVSSEVFEQFPDYLVIVLVADRVENRRHVERARTLLAESARLACERWRAIDPKALP EEEEECHHHHHHCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EIDVWRRAFRRLGWSASTYQSSVEALVRRTLKGNPPPSINPAVDLANAASLRFLVPIGAH CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEEEECCH DLATAPNGLTVRASLPGDRFLPLGDGAPEEPEVGEIVYVHDHDVRTRRWVWRQSRTGLVT HHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCC PDSRTILFPIDAFQGVTAAAAVAAADWLSEQLQSLLGATVQRGLVDLNQPVFDSALGDAI CCCCEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC S C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA