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The map label for this gene is 221632437

Identifier: 221632437

GI number: 221632437

Start: 408977

End: 409597

Strand: Reverse

Name: 221632437

Synonym: trd_0409

Alternate gene names: NA

Gene position: 409597-408977 (Counterclockwise)

Preceding gene: 221632438

Following gene: 221632436

Centisome position: 20.45

GC content: 65.54

Gene sequence:

>621_bases
ATGCCTACGCGACCATGGCTTCGTCGCCTCGTCGTCGCCGAACTCGCGGCCATCGCCATCGTCCTCGCTGTCGTCGGCTG
GTACGTCTGGCAGTCGCGGGCAGCCCCGTCGCTGAACGGGATGCTGCTCGACCCGCCCCAAGAGATCCCCGCCATCCAAC
TCACCGGGAGCGACGGCCAGCCTCATGCCTTGACCGACTTCCAGGGGAAGGTGACGGTCGTCTTTTTCGGCTACACGCAC
TGCCCGGACGTCTGCCCGATGACTGCCTCGACGATGGCCCGCGCACGCGCCATGCTCGGCAACCAGGCCGATCGCGTGCA
GCTCGTCTTCGTCTCGGTCGACCCGGAACGCGATTCCCCTGAACGGCTGGCGAGCTATCTGGCGAAGTACGACCCGACAT
TCCTGGGGCTGACCGGAGACGAGGATCGGATCCGCGAGTTGGCCACCGTCTTCGGTGTCCACTATGCCAAGGTGGAATCG
ACGTCCGCCCTGGGATACTTGGTGGAGCATACCTCGTCCAGTTTCGTCTTGGATACCCAGGGGAAACTGCGAGCCGTCCT
CCCGTTCGGGCTCACCCCGGAGCAGGTGGCGAGCGACCTCCGTGCCCTGTTGCGTCGCTGA

Upstream 100 bases:

>100_bases
TCGAGGCACTCGAGCGGGAGATCCGCGAGAGCCAGGGTATGCGGCGCTATCTCTACGAGGCGGCTCACCTGTTCCGATGC
TACGTTTGAGGAGTCTCGAT

Downstream 100 bases:

>100_bases
GCGTGTTGCTCGATCGGCAACAGTCGACTGAGGAGGTCATGAAGATGCGTACGGTGCTCGATCGAATCCGAGGTTGGTTC
GTACTCGCATTGACGGTCGT

Product: putative SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MPTRPWLRRLVVAELAAIAIVLAVVGWYVWQSRAAPSLNGMLLDPPQEIPAIQLTGSDGQPHALTDFQGKVTVVFFGYTH
CPDVCPMTASTMARARAMLGNQADRVQLVFVSVDPERDSPERLASYLAKYDPTFLGLTGDEDRIRELATVFGVHYAKVES
TSALGYLVEHTSSSFVLDTQGKLRAVLPFGLTPEQVASDLRALLRR

Sequences:

>Translated_206_residues
MPTRPWLRRLVVAELAAIAIVLAVVGWYVWQSRAAPSLNGMLLDPPQEIPAIQLTGSDGQPHALTDFQGKVTVVFFGYTH
CPDVCPMTASTMARARAMLGNQADRVQLVFVSVDPERDSPERLASYLAKYDPTFLGLTGDEDRIRELATVFGVHYAKVES
TSALGYLVEHTSSSFVLDTQGKLRAVLPFGLTPEQVASDLRALLRR
>Mature_205_residues
PTRPWLRRLVVAELAAIAIVLAVVGWYVWQSRAAPSLNGMLLDPPQEIPAIQLTGSDGQPHALTDFQGKVTVVFFGYTHC
PDVCPMTASTMARARAMLGNQADRVQLVFVSVDPERDSPERLASYLAKYDPTFLGLTGDEDRIRELATVFGVHYAKVEST
SALGYLVEHTSSSFVLDTQGKLRAVLPFGLTPEQVASDLRALLRR

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=152, Percent_Identity=28.9473684210526, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI281182722, Length=152, Percent_Identity=28.9473684210526, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI281182716, Length=152, Percent_Identity=28.9473684210526, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI153791313, Length=152, Percent_Identity=28.9473684210526, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI4759068, Length=134, Percent_Identity=29.8507462686567, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17531419, Length=150, Percent_Identity=27.3333333333333, Blast_Score=87, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6319498, Length=182, Percent_Identity=30.2197802197802, Blast_Score=96, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6319511, Length=127, Percent_Identity=28.3464566929134, Blast_Score=78, Evalue=9e-16,
Organism=Drosophila melanogaster, GI19920710, Length=133, Percent_Identity=35.3383458646617, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22613; Mature: 22482

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTRPWLRRLVVAELAAIAIVLAVVGWYVWQSRAAPSLNGMLLDPPQEIPAIQLTGSDGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECCCCC
PHALTDFQGKVTVVFFGYTHCPDVCPMTASTMARARAMLGNQADRVQLVFVSVDPERDSP
CCEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCH
ERLASYLAKYDPTFLGLTGDEDRIRELATVFGVHYAKVESTSALGYLVEHTSSSFVLDTQ
HHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECC
GKLRAVLPFGLTPEQVASDLRALLRR
CCEEEEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PTRPWLRRLVVAELAAIAIVLAVVGWYVWQSRAAPSLNGMLLDPPQEIPAIQLTGSDGQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECCCCC
PHALTDFQGKVTVVFFGYTHCPDVCPMTASTMARARAMLGNQADRVQLVFVSVDPERDSP
CCEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCH
ERLASYLAKYDPTFLGLTGDEDRIRELATVFGVHYAKVESTSALGYLVEHTSSSFVLDTQ
HHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECC
GKLRAVLPFGLTPEQVASDLRALLRR
CCEEEEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA