| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221632225
Identifier: 221632225
GI number: 221632225
Start: 196656
End: 197651
Strand: Reverse
Name: 221632225
Synonym: trd_0191
Alternate gene names: NA
Gene position: 197651-196656 (Counterclockwise)
Preceding gene: 221632226
Following gene: 221632224
Centisome position: 9.87
GC content: 66.37
Gene sequence:
>996_bases ATGAACGCGATCACCTGGTTGCTCTGGGCACTCGTGCTGGTGCTCGCGATCTCCGTGACGCGCAATCCGTTCTACTTGAG CCTGGCAGCGCTGGCCGTTGCGACCGTCTGGATCGCAGTCGATACGGCGCGGCCGCTCGGCCGGCAGGCGCCTCGCTTAC CGCTCCTGGCTGCTGGCTTTCTCCTACCGTGGAGCACCGCCGTCAATGCGCTGCTTGCCCACATCGGCGACCGCGTCCTC TTCCGACTTCCCGCCTGGCCGGTCATCGGCGGACCCATCACGCTCAATGCAGCACTCTACGGCTTGCTCACCGGCATCGC ACTGACCACGGCACTCGCCGGAACGACTCTCCTTCACGCCGTCATCGATCGTCACCAGGCTCTGCGCGCGATTCCTCCCA ATCAGCGTGTGCTCGCGACCACTCTCGCGATTGCCCTGAACGCGCTCCCTGCTTTCGCGACAGCAGCACGCGATGCGGTC GAAGCGTCGCGCCTGCGCGGCCTGGCACTGCCACGCTGGAGGCAGCTTCAGATCGTCGTAGCAGCGATCCTCTATCGTGG TATCGACTACAGTCTCGCCACAGCTGAGGTACTGGAGACGCGGAGCTTCGCTGCGCGGCACCGGGCGAGACCCGCTACGC AAGCCAGTTCGCTCGCGATGCTCCTCGCTAGCTTCGCCGTCATCGGAGGCAGCCTGGCTGGGAAACCGAGCCTCGCTCTG GTCGGCGTTGCCGGGCTGTCCCTCGGTTCGGCGCTGATCGTCCACTCGACCTGGCGCAATCTCCGCACTCTGCAGTGGTC ACTCGCGACCGGAGCGGCGGCGTCGCTCTTGCTCGCAGCCTCGACCCTCCTCGTCCTGTCGCTCCGCGACTCCGCTGCCG ACCTGGCGTACTCGCCTTATCCGGCTTTGCGCTGGCCGGGTTTCTCTCCGCTCGCCGGGTTCGCCTTTCTCCTGCTCGCC TCACCGGCACTCTTTCTGCGAGGATCCGCGCGATGA
Upstream 100 bases:
>100_bases GCCATCCTACTGGCCCGCCCTGGGGCGCGCTCCTCTTCACGAGTCTCGCGGCCATCGTCCTGCTCGCGTACTCGTTCGCC CGCTGGCGGAGGCGGTCACC
Downstream 100 bases:
>100_bases TCGAAGTGGAGGCACTCCGCTACCGCTACCCCACGAGCCGGTATCCAGCACTGGTCGCCCCGCACTGGGCAGTGGAAGCT GGTGAGTTCGTGCTCTTGGC
Product: putative Cobalt transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MNAITWLLWALVLVLAISVTRNPFYLSLAALAVATVWIAVDTARPLGRQAPRLPLLAAGFLLPWSTAVNALLAHIGDRVL FRLPAWPVIGGPITLNAALYGLLTGIALTTALAGTTLLHAVIDRHQALRAIPPNQRVLATTLAIALNALPAFATAARDAV EASRLRGLALPRWRQLQIVVAAILYRGIDYSLATAEVLETRSFAARHRARPATQASSLAMLLASFAVIGGSLAGKPSLAL VGVAGLSLGSALIVHSTWRNLRTLQWSLATGAAASLLLAASTLLVLSLRDSAADLAYSPYPALRWPGFSPLAGFAFLLLA SPALFLRGSAR
Sequences:
>Translated_331_residues MNAITWLLWALVLVLAISVTRNPFYLSLAALAVATVWIAVDTARPLGRQAPRLPLLAAGFLLPWSTAVNALLAHIGDRVL FRLPAWPVIGGPITLNAALYGLLTGIALTTALAGTTLLHAVIDRHQALRAIPPNQRVLATTLAIALNALPAFATAARDAV EASRLRGLALPRWRQLQIVVAAILYRGIDYSLATAEVLETRSFAARHRARPATQASSLAMLLASFAVIGGSLAGKPSLAL VGVAGLSLGSALIVHSTWRNLRTLQWSLATGAAASLLLAASTLLVLSLRDSAADLAYSPYPALRWPGFSPLAGFAFLLLA SPALFLRGSAR >Mature_331_residues MNAITWLLWALVLVLAISVTRNPFYLSLAALAVATVWIAVDTARPLGRQAPRLPLLAAGFLLPWSTAVNALLAHIGDRVL FRLPAWPVIGGPITLNAALYGLLTGIALTTALAGTTLLHAVIDRHQALRAIPPNQRVLATTLAIALNALPAFATAARDAV EASRLRGLALPRWRQLQIVVAAILYRGIDYSLATAEVLETRSFAARHRARPATQASSLAMLLASFAVIGGSLAGKPSLAL VGVAGLSLGSALIVHSTWRNLRTLQWSLATGAAASLLLAASTLLVLSLRDSAADLAYSPYPALRWPGFSPLAGFAFLLLA SPALFLRGSAR
Specific function: Unknown
COG id: COG0619
COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34854; Mature: 34854
Theoretical pI: Translated: 12.18; Mature: 12.18
Prosite motif: PS00012 PHOSPHOPANTETHEINE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAITWLLWALVLVLAISVTRNPFYLSLAALAVATVWIAVDTARPLGRQAPRLPLLAAGF CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHH LLPWSTAVNALLAHIGDRVLFRLPAWPVIGGPITLNAALYGLLTGIALTTALAGTTLLHA HHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VIDRHQALRAIPPNQRVLATTLAIALNALPAFATAARDAVEASRLRGLALPRWRQLQIVV HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH AAILYRGIDYSLATAEVLETRSFAARHRARPATQASSLAMLLASFAVIGGSLAGKPSLAL HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEE VGVAGLSLGSALIVHSTWRNLRTLQWSLATGAAASLLLAASTLLVLSLRDSAADLAYSPY EEHHHHHHCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCC PALRWPGFSPLAGFAFLLLASPALFLRGSAR CCCCCCCCCHHHHHHHHHHHCCHHHCCCCCC >Mature Secondary Structure MNAITWLLWALVLVLAISVTRNPFYLSLAALAVATVWIAVDTARPLGRQAPRLPLLAAGF CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHH LLPWSTAVNALLAHIGDRVLFRLPAWPVIGGPITLNAALYGLLTGIALTTALAGTTLLHA HHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VIDRHQALRAIPPNQRVLATTLAIALNALPAFATAARDAVEASRLRGLALPRWRQLQIVV HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH AAILYRGIDYSLATAEVLETRSFAARHRARPATQASSLAMLLASFAVIGGSLAGKPSLAL HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEE VGVAGLSLGSALIVHSTWRNLRTLQWSLATGAAASLLLAASTLLVLSLRDSAADLAYSPY EEHHHHHHCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCC PALRWPGFSPLAGFAFLLLASPALFLRGSAR CCCCCCCCCHHHHHHHHHHHCCHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA