| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632220
Identifier: 221632220
GI number: 221632220
Start: 191637
End: 192536
Strand: Reverse
Name: 221632220
Synonym: trd_0186
Alternate gene names: NA
Gene position: 192536-191637 (Counterclockwise)
Preceding gene: 221632221
Following gene: 221632219
Centisome position: 9.61
GC content: 64.56
Gene sequence:
>900_bases ATGCGTGCGCTCATCGCCGCGGAATGGTTCAAAGTGACGCGACGGCCGATGACCTGGATCGCGCTCGGTATCCTGCTCGC CATCATGGCCACCCTCCGTCTTCTCTTGATCGCCCTCTCCTTCGTTTCCCTCCCGTCCGCACCGGGCCAAGAGATGCCCA CGAATCTTTTCGCGGATCTCGTGACCTTGCCTGGAGCCATCGCGGACAGCGTCAACTTCCTGCCCAGCACTGGTATCTTC GCGCTGCTCGTCGTCGCGGCCAGTTTCGCTGGTACCGAGTTCGCCTGGGGCACGATCGTCCCGCTCCTCGCCCGCGGTGC CTCGCGCACGCGGTTCGTCCTCGCGAAAGCACTCGTCGCGCTCGTCGTCGCGCTGCTCTACCTCATCGCGACCACCGTAG TAGGACTCGTCCTCGGTGCGATCGCGTCCCAGCTCCATCATGGGCAAATTCCGCTGGAATGGCTCCAGCGCGACTGGCGC GAGTTCCTGCTGGCCCTTCTGCGCGCCTACTGGGCCACGGTTCCCTACGTTCTGGCCGCGCTCGCTATCGCTCTCGTCTT CCGTTCCTCGGCCCTGGCAATGGGTATGGTGCTGGCATACGTCATCGTCGAGCAAGTCGGCCTCGGCGTCCTGCAACTTC TCCGGCCGATGATCGAGGACAGCGGGTTTTCCTGGCTCTTCACGCTGCTCGATTGGACCCTGCTCGGTCAGAACGCTTCC ACGCTCCAGGCGCTCAACACGCGCGCTTTCCTACCGACTGGTCTCGCCGAACAGGCGACGTCCGGTGATCTTCACCCCTG GCGCGCAGCCGTCGTTCTGGCAGCCTACAGCTTCGCCTTCCTGCTCGCCGCTCTGGTCGCGCTCCGCCGCGATATTCCGA CTCGCCCGACCAGTGCTTGA
Upstream 100 bases:
>100_bases TGCACCATGAACTCTACCTGCGCGAGTTGCGTCCACTCGAGGGAGACCTCGTTACTGCCTTCGTCGAACTGACGCGCGAG CGGTAGCGGAGGATTACGGC
Downstream 100 bases:
>100_bases GCACGTCATCACCTCGGCGAAAACCGGCCAGCGTCTGCGTCCGAGCGTCGGCTCGCTCATGGTTCCGGGCACGCCGAAAC TCGCCATCAGAGCGGTAGAA
Product: putative permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MRALIAAEWFKVTRRPMTWIALGILLAIMATLRLLLIALSFVSLPSAPGQEMPTNLFADLVTLPGAIADSVNFLPSTGIF ALLVVAASFAGTEFAWGTIVPLLARGASRTRFVLAKALVALVVALLYLIATTVVGLVLGAIASQLHHGQIPLEWLQRDWR EFLLALLRAYWATVPYVLAALAIALVFRSSALAMGMVLAYVIVEQVGLGVLQLLRPMIEDSGFSWLFTLLDWTLLGQNAS TLQALNTRAFLPTGLAEQATSGDLHPWRAAVVLAAYSFAFLLAALVALRRDIPTRPTSA
Sequences:
>Translated_299_residues MRALIAAEWFKVTRRPMTWIALGILLAIMATLRLLLIALSFVSLPSAPGQEMPTNLFADLVTLPGAIADSVNFLPSTGIF ALLVVAASFAGTEFAWGTIVPLLARGASRTRFVLAKALVALVVALLYLIATTVVGLVLGAIASQLHHGQIPLEWLQRDWR EFLLALLRAYWATVPYVLAALAIALVFRSSALAMGMVLAYVIVEQVGLGVLQLLRPMIEDSGFSWLFTLLDWTLLGQNAS TLQALNTRAFLPTGLAEQATSGDLHPWRAAVVLAAYSFAFLLAALVALRRDIPTRPTSA >Mature_299_residues MRALIAAEWFKVTRRPMTWIALGILLAIMATLRLLLIALSFVSLPSAPGQEMPTNLFADLVTLPGAIADSVNFLPSTGIF ALLVVAASFAGTEFAWGTIVPLLARGASRTRFVLAKALVALVVALLYLIATTVVGLVLGAIASQLHHGQIPLEWLQRDWR EFLLALLRAYWATVPYVLAALAIALVFRSSALAMGMVLAYVIVEQVGLGVLQLLRPMIEDSGFSWLFTLLDWTLLGQNAS TLQALNTRAFLPTGLAEQATSGDLHPWRAAVVLAAYSFAFLLAALVALRRDIPTRPTSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32261; Mature: 32261
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALIAAEWFKVTRRPMTWIALGILLAIMATLRLLLIALSFVSLPSAPGQEMPTNLFADL CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH VTLPGAIADSVNFLPSTGIFALLVVAASFAGTEFAWGTIVPLLARGASRTRFVLAKALVA HHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH LVVALLYLIATTVVGLVLGAIASQLHHGQIPLEWLQRDWREFLLALLRAYWATVPYVLAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAIALVFRSSALAMGMVLAYVIVEQVGLGVLQLLRPMIEDSGFSWLFTLLDWTLLGQNAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH TLQALNTRAFLPTGLAEQATSGDLHPWRAAVVLAAYSFAFLLAALVALRRDIPTRPTSA HHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRALIAAEWFKVTRRPMTWIALGILLAIMATLRLLLIALSFVSLPSAPGQEMPTNLFADL CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH VTLPGAIADSVNFLPSTGIFALLVVAASFAGTEFAWGTIVPLLARGASRTRFVLAKALVA HHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH LVVALLYLIATTVVGLVLGAIASQLHHGQIPLEWLQRDWREFLLALLRAYWATVPYVLAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAIALVFRSSALAMGMVLAYVIVEQVGLGVLQLLRPMIEDSGFSWLFTLLDWTLLGQNAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH TLQALNTRAFLPTGLAEQATSGDLHPWRAAVVLAAYSFAFLLAALVALRRDIPTRPTSA HHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA