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The map label for this gene is soxB [H]

Identifier: 221632155

GI number: 221632155

Start: 127029

End: 128195

Strand: Reverse

Name: soxB [H]

Synonym: trd_0120

Alternate gene names: 221632155

Gene position: 128195-127029 (Counterclockwise)

Preceding gene: 221632156

Following gene: 221632154

Centisome position: 6.4

GC content: 63.67

Gene sequence:

>1167_bases
ATGCCGTCCTACGATGTGCTGATCATCGGTGGTGGAAACCTCGGACTGTGGACAGCGTATTTTCTCGCGAAGCGCGGTCT
GCATCGAATCGCCGTTTGCGAGCGCTACTGGGCCGGGTTCGGTGCCACCACGCGCTCGGCTGGGATCGTGCGCCAGCAGG
GCGGTTCAGAAACCGCCGTGAAACTCGGGAAATGGTCGCGCGAGCTCTATCAGGAATTGGGCCGCGAATTGGGACTCGGA
AGCGGCTTCGTGGAAGTCGGCTACTACGTGCTCGCCTCGACACCGGAAGAACGAGCAGCCTTTCAGGAACTCGTGACCTT
GCGCCAGCGCTGCGGGGTCGAAAATACCTGGCTCGAGCCGAGCGAGCTCGCTCAGCGCCTTCCCTTCGTCGACTGGAGCC
GCTATCTGGGCGCGACGTACACACCGAACGACGGCTTCGTCTACCCGCACATCGTGGCACGCAACATTACGCACGCCGTT
CTCCGCGCCGGCGTCGCGCTCTTCGAGGAGTGCGAGGTCCAGGAGATCGAGCCGCTGGCCAGCGGCTACCGCGTGAGGAC
AACGCGGGGCACCTTCGAGGCCGAGCGCGTCGTCGATGCCGCCGGTCCACGCGGTGCCCGCCGGATCGGCGAACTGGTCG
GCATCGACGTGCCAGTTTCGGCAGCTCGACATCAGATCGTGAGTTTCCCGACGAGGCCTGCCGACCTGCCGGCGAACTTC
CCCATGCTCTTCGTGCTCGCCAAGGGATATTACTTGCGTCCCGACGAGCACGGTCTCCTCTTGGGGATGAGCAACCCGGC
GGAACAGCCGGACCCGACCGATCGCTTCCTCCTGGAATTCGACTGGGACTATTTCGAGCGACTCAAGCCCGACTGGGAAG
CGACGATACCGGCACTCCGTGGCTTGCCGATCGGGCGAGCCTGGACCGGTTCGATCGATTACACGCCGGACCATCTTCCT
ATCATCGATGAGCCACGCTTCGGCTTCTACGTGTTGGCCGCGGGTGGACACGGCATGATGTGGGGACCAGCGCTCGGTAT
GAAGATGGCCGAACTGATCCTGGACGAGCGCGTGAGCGACCTTCCCGACGAGGAAATCCGGCTCAGCCGCTTCCAGGAAC
CTGGCAAAGTGCGCGATGCCATCGCGCTTCCTTTCCCGACCCGTTGA

Upstream 100 bases:

>100_bases
AACGATTGGGTACTCACGCAACTCGGCGACGTCGCGACTGACTCATCGACCTGAGGCAGGCAGTCGAGCGAGAGGAAAGC
GGTGAAAGGAGCGACGGGCG

Downstream 100 bases:

>100_bases
GAGCACTGTGCATGGCTCAGACGAGGAGGAGGTGTACCATGGCTGATCGGATCGATGCCCTGCTCCAGTTCCTGGCGCGC
CAGCAGCGCCTCCGCCGCCG

Product: putative sarcosine oxidase subunit beta

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MPSYDVLIIGGGNLGLWTAYFLAKRGLHRIAVCERYWAGFGATTRSAGIVRQQGGSETAVKLGKWSRELYQELGRELGLG
SGFVEVGYYVLASTPEERAAFQELVTLRQRCGVENTWLEPSELAQRLPFVDWSRYLGATYTPNDGFVYPHIVARNITHAV
LRAGVALFEECEVQEIEPLASGYRVRTTRGTFEAERVVDAAGPRGARRIGELVGIDVPVSAARHQIVSFPTRPADLPANF
PMLFVLAKGYYLRPDEHGLLLGMSNPAEQPDPTDRFLLEFDWDYFERLKPDWEATIPALRGLPIGRAWTGSIDYTPDHLP
IIDEPRFGFYVLAAGGHGMMWGPALGMKMAELILDERVSDLPDEEIRLSRFQEPGKVRDAIALPFPTR

Sequences:

>Translated_388_residues
MPSYDVLIIGGGNLGLWTAYFLAKRGLHRIAVCERYWAGFGATTRSAGIVRQQGGSETAVKLGKWSRELYQELGRELGLG
SGFVEVGYYVLASTPEERAAFQELVTLRQRCGVENTWLEPSELAQRLPFVDWSRYLGATYTPNDGFVYPHIVARNITHAV
LRAGVALFEECEVQEIEPLASGYRVRTTRGTFEAERVVDAAGPRGARRIGELVGIDVPVSAARHQIVSFPTRPADLPANF
PMLFVLAKGYYLRPDEHGLLLGMSNPAEQPDPTDRFLLEFDWDYFERLKPDWEATIPALRGLPIGRAWTGSIDYTPDHLP
IIDEPRFGFYVLAAGGHGMMWGPALGMKMAELILDERVSDLPDEEIRLSRFQEPGKVRDAIALPFPTR
>Mature_387_residues
PSYDVLIIGGGNLGLWTAYFLAKRGLHRIAVCERYWAGFGATTRSAGIVRQQGGSETAVKLGKWSRELYQELGRELGLGS
GFVEVGYYVLASTPEERAAFQELVTLRQRCGVENTWLEPSELAQRLPFVDWSRYLGATYTPNDGFVYPHIVARNITHAVL
RAGVALFEECEVQEIEPLASGYRVRTTRGTFEAERVVDAAGPRGARRIGELVGIDVPVSAARHQIVSFPTRPADLPANFP
MLFVLAKGYYLRPDEHGLLLGMSNPAEQPDPTDRFLLEFDWDYFERLKPDWEATIPALRGLPIGRAWTGSIDYTPDHLPI
IDEPRFGFYVLAAGGHGMMWGPALGMKMAELILDERVSDLPDEEIRLSRFQEPGKVRDAIALPFPTR

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=385, Percent_Identity=29.0909090909091, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI21361378, Length=385, Percent_Identity=29.0909090909091, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI24797151, Length=369, Percent_Identity=27.9132791327913, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI194306651, Length=383, Percent_Identity=26.8929503916449, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI8923708, Length=413, Percent_Identity=24.9394673123487, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994045, Length=373, Percent_Identity=23.0563002680965, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994052, Length=380, Percent_Identity=22.8947368421053, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI20130091, Length=387, Percent_Identity=27.6485788113695, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI28571104, Length=356, Percent_Identity=26.685393258427, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 43326; Mature: 43195

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSYDVLIIGGGNLGLWTAYFLAKRGLHRIAVCERYWAGFGATTRSAGIVRQQGGSETAV
CCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHH
KLGKWSRELYQELGRELGLGSGFVEVGYYVLASTPEERAAFQELVTLRQRCGVENTWLEP
HHHHHHHHHHHHHHHHCCCCCCHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCH
SELAQRLPFVDWSRYLGATYTPNDGFVYPHIVARNITHAVLRAGVALFEECEVQEIEPLA
HHHHHHCCCCCHHHHCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
SGYRVRTTRGTFEAERVVDAAGPRGARRIGELVGIDVPVSAARHQIVSFPTRPADLPANF
CCCEEEECCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC
PMLFVLAKGYYLRPDEHGLLLGMSNPAEQPDPTDRFLLEFDWDYFERLKPDWEATIPALR
CEEEEEECCEEECCCCCEEEEECCCCCCCCCCCCCEEEEECHHHHHHCCCCHHHHHHHHH
GLPIGRAWTGSIDYTPDHLPIIDEPRFGFYVLAAGGHGMMWGPALGMKMAELILDERVSD
CCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHHHC
LPDEEIRLSRFQEPGKVRDAIALPFPTR
CCCHHHHHHHCCCCCCHHHEEECCCCCC
>Mature Secondary Structure 
PSYDVLIIGGGNLGLWTAYFLAKRGLHRIAVCERYWAGFGATTRSAGIVRQQGGSETAV
CCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHH
KLGKWSRELYQELGRELGLGSGFVEVGYYVLASTPEERAAFQELVTLRQRCGVENTWLEP
HHHHHHHHHHHHHHHHCCCCCCHHHHCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCH
SELAQRLPFVDWSRYLGATYTPNDGFVYPHIVARNITHAVLRAGVALFEECEVQEIEPLA
HHHHHHCCCCCHHHHCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
SGYRVRTTRGTFEAERVVDAAGPRGARRIGELVGIDVPVSAARHQIVSFPTRPADLPANF
CCCEEEECCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC
PMLFVLAKGYYLRPDEHGLLLGMSNPAEQPDPTDRFLLEFDWDYFERLKPDWEATIPALR
CEEEEEECCEEECCCCCEEEEECCCCCCCCCCCCCEEEEECHHHHHHCCCCHHHHHHHHH
GLPIGRAWTGSIDYTPDHLPIIDEPRFGFYVLAAGGHGMMWGPALGMKMAELILDERVSD
CCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECHHHHHHHHHHHHHHHHHC
LPDEEIRLSRFQEPGKVRDAIALPFPTR
CCCHHHHHHHCCCCCCHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]