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The map label for this gene is rimM [H]

Identifier: 221632147

GI number: 221632147

Start: 119164

End: 119718

Strand: Reverse

Name: rimM [H]

Synonym: trd_0111

Alternate gene names: 221632147

Gene position: 119718-119164 (Counterclockwise)

Preceding gene: 221632148

Following gene: 221632136

Centisome position: 5.98

GC content: 63.6

Gene sequence:

>555_bases
ATGACCAGATCGACGCCCAACCGACAGCCACCAGTTGAGCGTCCAGCGTCTCCCGAGCGACTGTCGATCGGTCGGATCGT
CGGTGCGCATGGGGTGCGCGGCACCGTGAAACTGAAGATCTGGACCCATTTCCCTGAGCGCATTCCGCATCTCGAATACG
TCTACCTGGGCGAGGAGCCGACACCGCGTCGGCTGCTCCGCGCTCGGGTGCAGGGTGATCTCGCTTTCCTCCAGCTGGAA
GGTATCACGACGCGCAACGAAGCGGAGGCCATGCGCGGCGTCGTTGTCCGGATCGACCGCAGCCAAGCGGCCCCTCTGGG
TGAGGACGAGTACTACCAGTTCGAGATCCTCGGGTTGCAGGTGGTGGACGAAGCAGGAAACGTGCTCGGACGCGTGATCG
AGATCTTGGAGACCGGCGCGAACGACGTCTATGTCGTCCAGCGACCGGATGGAAGCGAACTCCTCCTTCCCGCCATCCGC
TCGGTCATCCTCGCGGTCGACCTCGAGCAGCAACGCCTGGTCGTTCGCCCGCCGCGTTACTATGACGAGGAGTGA

Upstream 100 bases:

>100_bases
GGCAAGGTGATCGGTCGGGAAGGAAAGATCGCCCGCGCGATCCGCACGATGCTCGGCATCGCCGCCGTGCGGCAAGGTGT
CCACGCCAGCCTCACCATCG

Downstream 100 bases:

>100_bases
CGACCTCGGCGCGCCTGCAGGACCCGCCAGACCTCTCCAGCAGGAACACCACTCGCCTGCAACAAGACCAAGAGATGGTA
GAGGAGATCGGCTGCTTCCT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTRSTPNRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYLGEEPTPRRLLRARVQGDLAFLQLE
GITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQVVDEAGNVLGRVIEILETGANDVYVVQRPDGSELLLPAIR
SVILAVDLEQQRLVVRPPRYYDEE

Sequences:

>Translated_184_residues
MTRSTPNRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYLGEEPTPRRLLRARVQGDLAFLQLE
GITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQVVDEAGNVLGRVIEILETGANDVYVVQRPDGSELLLPAIR
SVILAVDLEQQRLVVRPPRYYDEE
>Mature_183_residues
TRSTPNRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYLGEEPTPRRLLRARVQGDLAFLQLEG
ITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQVVDEAGNVLGRVIEILETGANDVYVVQRPDGSELLLPAIRS
VILAVDLEQQRLVVRPPRYYDEE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=143, Percent_Identity=25.8741258741259, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20815; Mature: 20684

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSTPNRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYLGEEP
CCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCEEEEEEEEECCHHHCCCEEEEEECCCC
TPRRLLRARVQGDLAFLQLEGITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQ
CHHHHHHHHHCCCEEEEEEECCCCCCHHHHHCEEEEEEECCCCCCCCCCCEEEEEEEEEE
VVDEAGNVLGRVIEILETGANDVYVVQRPDGSELLLPAIRSVILAVDLEQQRLVVRPPRY
EECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHEEECCCCCEEEECCCCC
YDEE
CCCC
>Mature Secondary Structure 
TRSTPNRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYLGEEP
CCCCCCCCCCCCCCCCCCEEECCEEEECCCCCEEEEEEEEECCHHHCCCEEEEEECCCC
TPRRLLRARVQGDLAFLQLEGITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQ
CHHHHHHHHHCCCEEEEEEECCCCCCHHHHHCEEEEEEECCCCCCCCCCCEEEEEEEEEE
VVDEAGNVLGRVIEILETGANDVYVVQRPDGSELLLPAIRSVILAVDLEQQRLVVRPPRY
EECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHEEECCCCCEEEECCCCC
YDEE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA