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The map label for this gene is xerD

Identifier: 221232612

GI number: 221232612

Start: 1835303

End: 1836037

Strand: Reverse

Name: xerD

Synonym: SPN23F_18900

Alternate gene names: NA

Gene position: 1836037-1835303 (Counterclockwise)

Preceding gene: 221232613

Following gene: 221232611

Centisome position: 82.66

GC content: 42.72

Gene sequence:

>735_bases
ATGAGAGACAGGATTTCAGCCTTTTTAGAGGAAAAGCAGGGCTTGTCTGTCAATTCCAAGCAGTCCTATAAGTATGATTT
GGAGCAATTTTTAGACATGGTAGGTGAGCGGATTTCTGAGACCAGTCTCAAGATTTACCAAGCCCAGCTAGCCAATCTAA
AAATCAGCGCCCAGAAGCGAAAGATTTCGGCCTGTAACCAATTTCTATACTTTCTCTATCAAAAAGGAGAGGTGGACAGC
TTTTACCGCTTGGAATTAGCCAAACAAGCTGAAAAGAAGACGGAAAAGCCAGAGATTCTATACCTAGACTCTTTTTGGCA
GGAAAGCGACCATCCAGAGGGCCGCTTGCTAGCGCTCTTAATCCTAGAAATGGGGCTCTTGCCCAGTGAGATTTTAGCCA
TCAAGGTTGCGGACATCAATCTGGATTTTCAGGTGCTGCGAATCAGCAAGGCTTCCCAACAGAGGATTGTCACCATTCCC
ACGGCCTTGCTTTCAGAATTGGAACCCTTGATGGGGCAGACCTATCTTTTTGAAAGAGGAGAGAAACCCTATTCTCGTCA
GTGGGCCTTTCGTCAGTTAGAATCTTTTGTCAAGGAGAAAGGTTTTCCATCCTTATCAGCTCAAGTCTTACGTGAACAGT
TTATTCTAAGACAAATAGAAAACAAGGTCGATTTGTACGAAATTGCAAAAAAATTAGGATTAAAAACAGTCCTGACCTTA
GAAAAATATAGATAA

Upstream 100 bases:

>100_bases
CAGAGGGTATTTTCCAAGGGATTATTACGCGCAAGTCCATCCTCAAGGCCGTTAATGCCCTCTTGCATGACTTTAGTAAG
GAATATGAGATTCGATGCCA

Downstream 100 bases:

>100_bases
TGGATATTAAATTAAAAGATTTTGAAGGACCCCTGGACTTGCTCTTGCATCTGGTTTCTAAGTACCAGATGGATATCTAC
GATGTGCCCATTACGGAAGT

Product: site-specific tyrosine recombinase XerD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQKRKISACNQFLYFLYQKGEVDS
FYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLALLILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVTIP
TALLSELEPLMGQTYLFERGEKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVLTL
EKYR

Sequences:

>Translated_244_residues
MRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQKRKISACNQFLYFLYQKGEVDS
FYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLALLILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVTIP
TALLSELEPLMGQTYLFERGEKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVLTL
EKYR
>Mature_244_residues
MRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQKRKISACNQFLYFLYQKGEVDS
FYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLALLILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVTIP
TALLSELEPLMGQTYLFERGEKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVLTL
EKYR

Specific function: Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD-like subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XERDL_STRP2 (Q04IT1)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_817107.1
- ProteinModelPortal:   Q04IT1
- STRING:   Q04IT1
- EnsemblBacteria:   EBSTRT00000020194
- GeneID:   4442354
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_1657
- eggNOG:   COG0582
- GeneTree:   EBGT00050000028357
- HOGENOM:   HBG697235
- ProtClustDB:   PRK02436
- GO:   GO:0005737
- HAMAP:   MF_01817
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR020876
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 28473; Mature: 28473

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: ACT_SITE 243-243

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQKR
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHH
KISACNQFLYFLYQKGEVDSFYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLALL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHCCCCCCCHHHHHHH
ILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVTIPTALLSELEPLMGQTYLFERG
HHHHCCCCCHHEEEEEEECCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCHHHHHCC
EKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVLTL
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
EKYR
HCCC
>Mature Secondary Structure
MRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQKR
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHH
KISACNQFLYFLYQKGEVDSFYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLALL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHCCCCCCCHHHHHHH
ILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVTIPTALLSELEPLMGQTYLFERG
HHHHCCCCCHHEEEEEEECCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCHHHHHCC
EKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVLTL
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
EKYR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA