| Definition | Streptococcus pneumoniae ATCC 700669, complete genome. |
|---|---|
| Accession | NC_011900 |
| Length | 2,221,315 |
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The map label for this gene is alaS [H]
Identifier: 221232124
GI number: 221232124
Start: 1320420
End: 1323038
Strand: Reverse
Name: alaS [H]
Synonym: SPN23F_13480
Alternate gene names: 221232124
Gene position: 1323038-1320420 (Counterclockwise)
Preceding gene: 221232125
Following gene: 221232122
Centisome position: 59.56
GC content: 44.71
Gene sequence:
>2619_bases ATGAAACAACTATCTAGTGCACAAGTACGCCAAATGTGGCTTGATTTCTGGGCGACCAAAGCTCACTCAGTAGAACCATC AGTAAGTTTGGTTCCTGTAAATGACCCAACTCTTTTGTGGATCAACTCTGGGGTAGCAACCCTTAAGAAATACTTTGACG GGACCATTATCCCTGAAAATCCACGTATTACCAATGCCCAAAAGGCTATCCGTACCAACGACATCGAAAACGTAGGGAAG ACTGCGCGTCACCATACCATGTTTGAAATGCTGGGGAACTTCTCTATCGGGGATTACTTCCGTGACGAAGCTATCACTTG GGCTTATGAGCTTTTGACAAGCCCTGAATGGTTTGATTTCCCTGCTGAAAAACTTTACATGACCTACTATCCAGACGATA AAGATTCTTACAACCGCTGGATTGAAGTGGGAGTGGATCCAAGTCACTTGATTCCAATTGAGGACAACTTCTGGGAAATC GGTGCGGGACCTTCTGGACCAGATACAGAAATCTTCTTTGACCGTGGGGAAGCCTTTGACCCAGAAAATATCGGTCTTCG CCTGCTTGCAGAAGATATTGAAAACGACCGTTATATTGAAATCTGGAACATCGTTTTGTCACAATTTAACGCAGACCCTG CTGTTCCTCGTAGCGAATACAAGGAATTGCCACATAAGAACATTGATACGGGCGCTGGTTTGGAGCGTTTGGTGGCTGTT ATCCAAGGGGCTAAGACCAACTTTGAAACGGACCTCTTCATGCCGATTATCCGTGAAGTCGAGAAATTGTCTGGTAAGGT TTATGACCAAGATGGCGACAACATGAGCTTCAAGGTTATCGCAGACCACATTCGTTCTCTTTCATTTGCTATCGGTGATG GTGCCCTTCCAGGAAATGAAGGTCGTGGTTATGTTCTTCGTCGTCTTCTCCGTCGTGCTTCTATGCATGGTCAAAAATTG GGTATCAACGAACCTTTCCTTTACAAATTGGTTCCAACTGTTGGAAAAATCATGGAAAGCTACTACCCAGAAGTGCTTGA GAAACGTGACTTTATTGAGAAAATCGTTAAGAGCGAAGAAGAATCATTTGCCCGTACCCTTCACTCAGGTCAACACTTTG CCCAAGGCATTGTAGCAGACTTGAAAGAAAAAGGTCAATCTGTTATCGCTGGTTCAGATGTCTTCAAACTCTATGATACT TATGGGTTCCCAGTTGAATTGACTGAAGAAATCGCTGAAGAAGCTGGTATGACTGTAGACCGTGAAGGTTTTGAAGCAGC CATGAAAGAACAGCAAGAACGCGCGCGTGCCTCAGCTGTCAAGGGTGGCTCAATGGGTATGCAAAATGAAACTCTTCAAA ACATCACTGTAGAAAGTGTCTTCAACTACAATGCTAGCCAATTGTCTTCTAAATTGGTAGCTATCGTGGCGGACAATGCA GAAGTAGAAGCTGTTTCAGAAGGAACTGCCTCTCTTATCTTTGCGGAAACGTCATTTTATGCTGAAATGGGTGGACAGGT AGCTGACTACGGACAAATCTTGGATGAGTCAGGTAAGGTTGTGGCTACTGTGACCAATGTTCAGAAAGCCCCAAATGGTC AAGCCCTTCATACAGTTGAAGTCCTTGCACCGCTTGCCTTGAACCAAGAATATACCTTGGCAATTGATAGCAATCGCCGT CACCGTGTCATGAAAAACCACACTGCGACTCATTTGCTTCACGCTGCCCTTCACAATATCCTTGGAAACCACGCAACACA GGCAGGATCTCTTAACGAAGTTGAATTCCTTCGCTTTGACTTTACCCACTTCCAAGCTGTAACTGCTGAAGAATTGCGTG CGATTGAACAGCAAGTCAACGAAAAAATCTGGGAAGCTCTTGAAGTTAAGACAGTTGAAACGGATATTGACACTGCTAAA GAAATGGGAGCTATGGCCCTCTTTGGTGAGAAATACGGCAAGGAAGTTCGTGTCGTGACTATCGGTGACTACTCTATTGA ACTTTGTGGTGGTACTCATGTTGGCAACACTTCTGAGATTGGTCTCTTCAAAATTGTCAAAGAAGAAGGAATCGGTTCAG GAACTCGCCGTATCTTGGCAGTGACTGGTAAGGAAGCCTTTGAAGCCTATCGTGAACAAGAGGATGCTCTTAAAGCTGTC GCAGCAATCTTGAAAGCACCTCAAGTCAAGGAAGTACCTCACAAGGTAGAAGGACTTCAAGAACAACTTCGTCAACTTCA AAAAGAAAATGCTGAGTTGAAAGAAAAAGCCGCAGCTGCAGCCGCAGGCGATATCTTCAAAGATGCTAAGGAAGTCAACG GTCATCGTTACATTGCTAGTCAAGTGTCTGTATCCGATGCCGGTGCCCTTCGTACTTTTGCAGATAACTGGAAACAAAAA GACTACTCTGATCTTCTTGTCCTAGTTGCCGCTATCGGTGACAAAGTCAATGTCCTTGTAGCAAGCAAGACAAAAGACCT TCATGCAGGAAACCTTGTCAAAGAATTAGCACCAATCATCGATGGACGTGGTGGTGGTAAACCAGACATGGCCATGGCAG GAGGAAGCAACCAAGCTAAGATCCAAGAATTGTTGGATGCAGTAGCAGGTAAATTGTAA
Upstream 100 bases:
>100_bases GGACGCTTATGCAGACCTAGTCATTTCCCTCTGTGTCGCGATTGACTATGTGGAAATGCTGGAAAGCCAATCACATTAAA CAAGTAAATAAGGAGACAAT
Downstream 100 bases:
>100_bases TCAAGTAAAGATCTATCCATTTGGGTAGGTCTTTTTGTGAATACAAAAAAGCCAAATCCGCTTGGACCTAGCTTGGTTAT TATGAGCTATTAGATGGTAT
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 872; Mature: 872
Protein sequence:
>872_residues MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRITNAQKAIRTNDIENVGK TARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDFPAEKLYMTYYPDDKDSYNRWIEVGVDPSHLIPIEDNFWEI GAGPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLVAV IQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQKL GINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDT YGFPVELTEEIAEEAGMTVDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQLSSKLVAIVADNA EVEAVSEGTASLIFAETSFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRR HRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEALEVKTVETDIDTAK EMGAMALFGEKYGKEVRVVTIGDYSIELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAV AAILKAPQVKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQK DYSDLLVLVAAIGDKVNVLVASKTKDLHAGNLVKELAPIIDGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL
Sequences:
>Translated_872_residues MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRITNAQKAIRTNDIENVGK TARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDFPAEKLYMTYYPDDKDSYNRWIEVGVDPSHLIPIEDNFWEI GAGPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLVAV IQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQKL GINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDT YGFPVELTEEIAEEAGMTVDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQLSSKLVAIVADNA EVEAVSEGTASLIFAETSFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRR HRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEALEVKTVETDIDTAK EMGAMALFGEKYGKEVRVVTIGDYSIELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAV AAILKAPQVKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQK DYSDLLVLVAAIGDKVNVLVASKTKDLHAGNLVKELAPIIDGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL >Mature_872_residues MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRITNAQKAIRTNDIENVGK TARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDFPAEKLYMTYYPDDKDSYNRWIEVGVDPSHLIPIEDNFWEI GAGPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLVAV IQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQKL GINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDT YGFPVELTEEIAEEAGMTVDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQLSSKLVAIVADNA EVEAVSEGTASLIFAETSFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRR HRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEALEVKTVETDIDTAK EMGAMALFGEKYGKEVRVVTIGDYSIELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAV AAILKAPQVKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQK DYSDLLVLVAAIGDKVNVLVASKTKDLHAGNLVKELAPIIDGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=967, Percent_Identity=34.746639089969, Blast_Score=476, Evalue=1e-134, Organism=Homo sapiens, GI38569417, Length=768, Percent_Identity=32.6822916666667, Blast_Score=345, Evalue=8e-95, Organism=Homo sapiens, GI217416402, Length=266, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-14, Organism=Homo sapiens, GI13376886, Length=266, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=2e-14, Organism=Escherichia coli, GI1789048, Length=896, Percent_Identity=42.5223214285714, Blast_Score=657, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=977, Percent_Identity=32.9580348004094, Blast_Score=442, Evalue=1e-124, Organism=Caenorhabditis elegans, GI17536681, Length=742, Percent_Identity=32.2102425876011, Blast_Score=358, Evalue=5e-99, Organism=Saccharomyces cerevisiae, GI6324911, Length=807, Percent_Identity=38.1660470879802, Blast_Score=495, Evalue=1e-140, Organism=Drosophila melanogaster, GI24582809, Length=970, Percent_Identity=32.9896907216495, Blast_Score=469, Evalue=1e-132, Organism=Drosophila melanogaster, GI45552267, Length=970, Percent_Identity=32.9896907216495, Blast_Score=469, Evalue=1e-132, Organism=Drosophila melanogaster, GI24658214, Length=859, Percent_Identity=28.4051222351572, Blast_Score=286, Evalue=3e-77, Organism=Drosophila melanogaster, GI18543305, Length=389, Percent_Identity=26.2210796915167, Blast_Score=76, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 96413; Mature: 96413
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCC PRITNAQKAIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC PAEKLYMTYYPDDKDSYNRWIEVGVDPSHLIPIEDNFWEIGAGPSGPDTEIFFDRGEAFD CCHHEEEEECCCCCCCCCCEEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEECCCCCC PENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLVAV CCCCCCEEEEHHCCCCCEEHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHH IQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGALPGNE HHCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHEECCCCCCCCC GRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIVKSEE CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH ESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAGMTVD HHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHCCEEC REGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQLSSKLVAIVADNA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHCCCHHHHHCCEEEEEECCC EVEAVSEGTASLIFAETSFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVE CEEEECCCCEEEEEEEHHHHHHHCCCHHHHHHHHCCCCCEEEEEECHHCCCCCCCEEHHH VLAPLALNQEYTLAIDSNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFD HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE FTHFQAVTAEELRAIEQQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEE IGDYSIELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAV ECCEEEEEECCCCCCCCCCCHHHEEEHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH AAILKAPQVKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIAS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE QVSVSDAGALRTFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDLHAGNLVKELAPII CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHH DGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL CCCCCCCCCCEECCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCC PRITNAQKAIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC PAEKLYMTYYPDDKDSYNRWIEVGVDPSHLIPIEDNFWEIGAGPSGPDTEIFFDRGEAFD CCHHEEEEECCCCCCCCCCEEEECCCCCEEEECCCCCEEECCCCCCCCCCEEEECCCCCC PENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLVAV CCCCCCEEEEHHCCCCCEEHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHH IQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGALPGNE HHCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHEECCCCCCCCC GRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIVKSEE CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH ESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAGMTVD HHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHCCEEC REGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQLSSKLVAIVADNA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHCCCHHHHHCCEEEEEECCC EVEAVSEGTASLIFAETSFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVE CEEEECCCCEEEEEEEHHHHHHHCCCHHHHHHHHCCCCCEEEEEECHHCCCCCCCEEHHH VLAPLALNQEYTLAIDSNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFD HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE FTHFQAVTAEELRAIEQQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEE IGDYSIELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAV ECCEEEEEECCCCCCCCCCCHHHEEEHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH AAILKAPQVKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIAS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE QVSVSDAGALRTFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDLHAGNLVKELAPII CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHH DGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL CCCCCCCCCCEECCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA