Click here to switch to the map view.

The map label for this gene is licD [H]

Identifier: 221232109

GI number: 221232109

Start: 1304159

End: 1305004

Strand: Reverse

Name: licD [H]

Synonym: SPN23F_13330

Alternate gene names: 221232109

Gene position: 1305004-1304159 (Counterclockwise)

Preceding gene: 221232110

Following gene: 221232108

Centisome position: 58.75

GC content: 41.02

Gene sequence:

>846_bases
ATGAACAATATGACTGATTTAAAAGCAATTCAGGCTCGTAGTCTGGAGATGGCTGAATATTTTGTGGCCTTTTGTAAAGA
ACATGATTTGCTCTGTTATCTCTGTGGCGGAGGCGCTATTGGTGCCCTTCGAAACAAGGGATTTATTCCTTGGGACGACG
ACCTAGACTTTTTTATGCCTCGTAAAGATTATGAGAAATTAGCAGAATTATGGCCTCGTTATGCAGATGAACGTTATTTC
TTGTCAAAGAGTCACAAGGATTTTGTTGATCGTAATCTTTTTATTACCATTCGTGACAAGGAAACCACCTGTATCAAGCC
TTATCAGCAGGATTTGGATTTGCCACATGGTCTGGCCTTGGATGTTTTGCCTTTGGATTATTATCCGAAAAATCCAGCTG
AGCGGAAAAAACAGGTTCGTTGGGCCTTGATTTATTCACTCTTTTGTGCGCAAACTATTCCAGAAAAGCATGGTGCTCTC
ATGAAATGGGGAAGTCGCATTTTACTGGGTTTGACTCCAAAATCTCTCTGTTATCGCATCTGGAAAAAAGCTGAGAAAGA
AATGACTAAGTATGATTTGGCTGATTGTGATGGCATTACAGAATTATGCTCAGGTCCTGGCTACATGAGAAACAAGTACC
CAATCACATCTTTTGAAGACAATCTTTTCTTGCCATTTGAAGGAACAGAGATGCCTATTCCAATCGGCTATGATGTCTAT
CTCAGAACTGCTTTTGGGGATTATATGACGCCTCCACCAGCAGACAAGCAGGTACCGCATCATGATGCTGTCATCGCTGA
TATGGATAAGTCTTATACAGAATACAAGGGAGAATATGGTGGCTAA

Upstream 100 bases:

>100_bases
ATAGCTATTTGGATAGCAGTCAGGCTTTGATTTTTTACAGTCTGCAATAGATTTTCACCCCTTGTTTGTGGTATAATGAA
ACGATACGATAGAAAGAATA

Downstream 100 bases:

>100_bases
GAAAAAAATCTTATTTTTTATGTGGTCTTTTTCTCTTGGAGGTGGTGCAGAGAAGATTCTATCAACCATTGTTTCAAATC
TGGATCCAGAAAAGTATGAT

Product: LicD-family phosphotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MNNMTDLKAIQARSLEMAEYFVAFCKEHDLLCYLCGGGAIGALRNKGFIPWDDDLDFFMPRKDYEKLAELWPRYADERYF
LSKSHKDFVDRNLFITIRDKETTCIKPYQQDLDLPHGLALDVLPLDYYPKNPAERKKQVRWALIYSLFCAQTIPEKHGAL
MKWGSRILLGLTPKSLCYRIWKKAEKEMTKYDLADCDGITELCSGPGYMRNKYPITSFEDNLFLPFEGTEMPIPIGYDVY
LRTAFGDYMTPPPADKQVPHHDAVIADMDKSYTEYKGEYGG

Sequences:

>Translated_281_residues
MNNMTDLKAIQARSLEMAEYFVAFCKEHDLLCYLCGGGAIGALRNKGFIPWDDDLDFFMPRKDYEKLAELWPRYADERYF
LSKSHKDFVDRNLFITIRDKETTCIKPYQQDLDLPHGLALDVLPLDYYPKNPAERKKQVRWALIYSLFCAQTIPEKHGAL
MKWGSRILLGLTPKSLCYRIWKKAEKEMTKYDLADCDGITELCSGPGYMRNKYPITSFEDNLFLPFEGTEMPIPIGYDVY
LRTAFGDYMTPPPADKQVPHHDAVIADMDKSYTEYKGEYGG
>Mature_281_residues
MNNMTDLKAIQARSLEMAEYFVAFCKEHDLLCYLCGGGAIGALRNKGFIPWDDDLDFFMPRKDYEKLAELWPRYADERYF
LSKSHKDFVDRNLFITIRDKETTCIKPYQQDLDLPHGLALDVLPLDYYPKNPAERKKQVRWALIYSLFCAQTIPEKHGAL
MKWGSRILLGLTPKSLCYRIWKKAEKEMTKYDLADCDGITELCSGPGYMRNKYPITSFEDNLFLPFEGTEMPIPIGYDVY
LRTAFGDYMTPPPADKQVPHHDAVIADMDKSYTEYKGEYGG

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 32535; Mature: 32535

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNMTDLKAIQARSLEMAEYFVAFCKEHDLLCYLCGGGAIGALRNKGFIPWDDDLDFFMP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCC
RKDYEKLAELWPRYADERYFLSKSHKDFVDRNLFITIRDKETTCIKPYQQDLDLPHGLAL
CHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCEEEEEEECCCCCEECCHHHHCCCCCCCEE
DVLPLDYYPKNPAERKKQVRWALIYSLFCAQTIPEKHGALMKWGSRILLGLTPKSLCYRI
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCCCEEEEECCHHHHHHHH
WKKAEKEMTKYDLADCDGITELCSGPGYMRNKYPITSFEDNLFLPFEGTEMPIPIGYDVY
HHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
LRTAFGDYMTPPPADKQVPHHDAVIADMDKSYTEYKGEYGG
EEEHHCCCCCCCCCCCCCCCCCCEEECCCHHHHHCCCCCCC
>Mature Secondary Structure
MNNMTDLKAIQARSLEMAEYFVAFCKEHDLLCYLCGGGAIGALRNKGFIPWDDDLDFFMP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCC
RKDYEKLAELWPRYADERYFLSKSHKDFVDRNLFITIRDKETTCIKPYQQDLDLPHGLAL
CHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCEEEEEEECCCCCEECCHHHHCCCCCCCEE
DVLPLDYYPKNPAERKKQVRWALIYSLFCAQTIPEKHGALMKWGSRILLGLTPKSLCYRI
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCCCEEEEECCHHHHHHHH
WKKAEKEMTKYDLADCDGITELCSGPGYMRNKYPITSFEDNLFLPFEGTEMPIPIGYDVY
HHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEE
LRTAFGDYMTPPPADKQVPHHDAVIADMDKSYTEYKGEYGG
EEEHHCCCCCCCCCCCCCCCCCCEEECCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]