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The map label for this gene is patM [H]

Identifier: 221231514

GI number: 221231514

Start: 627765

End: 628385

Strand: Reverse

Name: patM [H]

Synonym: SPN23F_06360

Alternate gene names: 221231514

Gene position: 628385-627765 (Counterclockwise)

Preceding gene: 221231528

Following gene: 221231513

Centisome position: 28.29

GC content: 46.38

Gene sequence:

>621_bases
TTGCATATTGCAGTTTGGGGAATTTTGGGATCCTTTCTGCTCGGTTTAATCGTTAGTATCATCCGACATTATCGAATCCT
TGTTTTGTCGCAAGTAGCGACAGCCTACATTGAATTGTCACGTAATACGCCCCTTTTGATTCAACTCTTCTTTCTCTACT
TCGGTCTTCCCCGAATCGGGATTGTCCTATCTTCAGAAGTCTGTGCAACGCTTGGGCTTGTCTTTTTAGGAGACTCCTAT
ATGGCAGAATCTTTCCGAAGTGGGCTGGAAGCCATCAGTCAAACCCAGCAGGAGATTGGCCTCGCTATTGGTCTGACACC
TCTACAGGTCTTTTACTATGTGGTTCTTCCGCAAGCAACAGCGGTGGCACTCCCCTCCTTTAGTGCCAATGTCATTTTCC
TTATCAAGGAAACCTCTGTTTTCTCAGCAGTGGCTTTGGCCGACCTCATGTACGTCGCCAAGGATTTGATTGGTCTCTAC
TATGAGACAGACATTGCGCTAGCTATGTTGGTAGTTGCTTATCTGATCATGCTGCTACCCATCTCACTGGTCTTTAGCTG
GATAGAAAGGAGGCTCCGCCATGCAGGATTCGGGAATCCAAGTACTCTTTCAAGGAAATAA

Upstream 100 bases:

>100_bases
CTACAATAACTGTATTATTTCTAGATGGGAGGTTCTATTTTTGGATTGATCCATTGTTGAACAATATCTACCACTATATC
AAAAGGCATTCTTTCTGACC

Downstream 100 bases:

>100_bases
TCTCCTGAGAATCTTACAGGGATTGGGCGTTACGATTGGGATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCGGAA
CAGTCATGGGAATCATCATG

Product: amino-acid ABC transporter integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MHIAVWGILGSFLLGLIVSIIRHYRILVLSQVATAYIELSRNTPLLIQLFFLYFGLPRIGIVLSSEVCATLGLVFLGDSY
MAESFRSGLEAISQTQQEIGLAIGLTPLQVFYYVVLPQATAVALPSFSANVIFLIKETSVFSAVALADLMYVAKDLIGLY
YETDIALAMLVVAYLIMLLPISLVFSWIERRLRHAGFGNPSTLSRK

Sequences:

>Translated_206_residues
MHIAVWGILGSFLLGLIVSIIRHYRILVLSQVATAYIELSRNTPLLIQLFFLYFGLPRIGIVLSSEVCATLGLVFLGDSY
MAESFRSGLEAISQTQQEIGLAIGLTPLQVFYYVVLPQATAVALPSFSANVIFLIKETSVFSAVALADLMYVAKDLIGLY
YETDIALAMLVVAYLIMLLPISLVFSWIERRLRHAGFGNPSTLSRK
>Mature_206_residues
MHIAVWGILGSFLLGLIVSIIRHYRILVLSQVATAYIELSRNTPLLIQLFFLYFGLPRIGIVLSSEVCATLGLVFLGDSY
MAESFRSGLEAISQTQQEIGLAIGLTPLQVFYYVVLPQATAVALPSFSANVIFLIKETSVFSAVALADLMYVAKDLIGLY
YETDIALAMLVVAYLIMLLPISLVFSWIERRLRHAGFGNPSTLSRK

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=154, Percent_Identity=35.7142857142857, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1787030, Length=195, Percent_Identity=29.2307692307692, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1786874, Length=209, Percent_Identity=28.2296650717703, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788645, Length=165, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786873, Length=200, Percent_Identity=25.5, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87082239, Length=146, Percent_Identity=28.0821917808219, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22739; Mature: 22739

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIAVWGILGSFLLGLIVSIIRHYRILVLSQVATAYIELSRNTPLLIQLFFLYFGLPRIG
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
IVLSSEVCATLGLVFLGDSYMAESFRSGLEAISQTQQEIGLAIGLTPLQVFYYVVLPQAT
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHH
AVALPSFSANVIFLIKETSVFSAVALADLMYVAKDLIGLYYETDIALAMLVVAYLIMLLP
HHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISLVFSWIERRLRHAGFGNPSTLSRK
HHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MHIAVWGILGSFLLGLIVSIIRHYRILVLSQVATAYIELSRNTPLLIQLFFLYFGLPRIG
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
IVLSSEVCATLGLVFLGDSYMAESFRSGLEAISQTQQEIGLAIGLTPLQVFYYVVLPQAT
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHH
AVALPSFSANVIFLIKETSVFSAVALADLMYVAKDLIGLYYETDIALAMLVVAYLIMLLP
HHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISLVFSWIERRLRHAGFGNPSTLSRK
HHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA