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The map label for this gene is glnR [H]

Identifier: 220932962

GI number: 220932962

Start: 2319139

End: 2319519

Strand: Reverse

Name: glnR [H]

Synonym: Hore_21300

Alternate gene names: 220932962

Gene position: 2319519-2319139 (Counterclockwise)

Preceding gene: 220932966

Following gene: 220932961

Centisome position: 89.97

GC content: 37.27

Gene sequence:

>381_bases
ATGATGAAAGGCAAAAAGGATATACCTATGAGGATTGTTAAAGAAAGGACCGGTTTAACTTCAAGGCAGATACGGTATTA
TGATGAGATGGGGTTGGTTTTCCCGGAAAGAACCAGGGGGAACCAGCGGCTTTTTTCAGAAGAAGATATTGACAGGTTAA
AAAAAATTAAAAAACTCCTTGAAGAAGGTTATACTATAGCTGCAATAAAAGAAAAACTGACCCCGCCTCCGCCGGTTAAA
GGTAATCCTGAGGATGTTACTTTAGATCCGGTCTTTGATAAGCTTAACAAAAATCCCCTGTCATCACTCTATCCTGTTTC
TAACAGGTATAAGCTAAATAAGATTCTTGGAAAAAAGAAAGAATTAAAGGAGGAAAAATAA

Upstream 100 bases:

>100_bases
GGAAATGTGCCAGTCCAGTTTTATAATAAAAACCTTACATGAAGTTGACATACAATCTGATTTATAATATAATTTTACAT
AATATAAGGGGGATGAATAG

Downstream 100 bases:

>100_bases
TGTCATTAACCAGGCAGGAAGTATTAAAGAAGGCAGAAGAGCTGAATGTAAAATTTATTCGACTCCAGTTTGTTGATATT
TTAGGGACGATTAAAAATGT

Product: putative MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MMKGKKDIPMRIVKERTGLTSRQIRYYDEMGLVFPERTRGNQRLFSEEDIDRLKKIKKLLEEGYTIAAIKEKLTPPPPVK
GNPEDVTLDPVFDKLNKNPLSSLYPVSNRYKLNKILGKKKELKEEK

Sequences:

>Translated_126_residues
MMKGKKDIPMRIVKERTGLTSRQIRYYDEMGLVFPERTRGNQRLFSEEDIDRLKKIKKLLEEGYTIAAIKEKLTPPPPVK
GNPEDVTLDPVFDKLNKNPLSSLYPVSNRYKLNKILGKKKELKEEK
>Mature_126_residues
MMKGKKDIPMRIVKERTGLTSRQIRYYDEMGLVFPERTRGNQRLFSEEDIDRLKKIKKLLEEGYTIAAIKEKLTPPPPVK
GNPEDVTLDPVFDKLNKNPLSSLYPVSNRYKLNKILGKKKELKEEK

Specific function: Represses many genes including the glnRA operon and tnrA during growth with nitrogen excess [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 14704; Mature: 14704

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKGKKDIPMRIVKERTGLTSRQIRYYDEMGLVFPERTRGNQRLFSEEDIDRLKKIKKLL
CCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
EEGYTIAAIKEKLTPPPPVKGNPEDVTLDPVFDKLNKNPLSSLYPVSNRYKLNKILGKKK
HCCCEEEEHHHHCCCCCCCCCCCCCEEECHHHHHCCCCCCCHHCCCCCCCHHHHHHCCHH
ELKEEK
HHCCCC
>Mature Secondary Structure
MMKGKKDIPMRIVKERTGLTSRQIRYYDEMGLVFPERTRGNQRLFSEEDIDRLKKIKKLL
CCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
EEGYTIAAIKEKLTPPPPVKGNPEDVTLDPVFDKLNKNPLSSLYPVSNRYKLNKILGKKK
HCCCEEEEHHHHCCCCCCCCCCCCCEEECHHHHHCCCCCCCHHCCCCCCCHHHHHHCCHH
ELKEEK
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2906311; 2573733; 1677938; 9384377 [H]