Click here to switch to the map view.

The map label for this gene is atpD [H]

Identifier: 220932616

GI number: 220932616

Start: 1907635

End: 1909098

Strand: Reverse

Name: atpD [H]

Synonym: Hore_17800

Alternate gene names: 220932616

Gene position: 1909098-1907635 (Counterclockwise)

Preceding gene: 220932617

Following gene: 220932615

Centisome position: 74.05

GC content: 46.38

Gene sequence:

>1464_bases
GTGAGTGAAGCAAAAAATGTAGGTCGGGTCGTTCAGGTTATAGGCCCGGTAGTAGATGTTGAATTTCCCGGTGGACATTT
ACCTGAAATATATAATGCTATCGAAATTGTCGGTGATAATAGAAAAATAAGTCAGGAAGGTCCCCATAATGAGGATAATG
AACCCGGTGAACCGATTCGTTTAATGGCCGAGGTTATGCATCAGCTCGGTGATAACAGGGTTCGTTGTGTTGCCATGTCC
TCAACCGATGGACTTGTCAGGGGCATGGAAGCCCGGGACCTTGGTGAGCCAATCACTGTTCCCGTTGGTGAAGAGGTCCT
GGGTAGACTATTTAATGTCCTCGGTGAGCCTATTGATAAACAGGGACCTGTTGATACTGAAGAAAAACTTCCCATTCATC
GCCCGGCTCCGAGTTATGAAGAGCAGGAAACAACTACTGAGGTATTTGAAACTGGCATCAAGGTTATTGACTTACTAGCC
CCCTATGCTAAAGGTGGAAAAGTTGGTCTCTTTGGTGGGGCAGGAGTTGGTAAAACTGTCTTGATACAGGAATTAATACA
CAATATAGCTATTGAACACGGGGGTTATTCAGTTTTTTCTGGTGTTGGAGAACGTACCAGGGAAGGTAATGACCTCTGGC
TGGAGTTCCAGGAGGCCGACATTCTTGATAAAGTAGCCCTTGTGTTTGGACAGATGAATGAACCACCTGGAGCCAGGATG
AGGGTAGGACTTACCGGATTAACTATGGCTGAGTATTTCAGAGATAAGGAAGGGCAGGATGTTCTCCTGTTTATAGATAA
CATTTTCCGTTTTATCCAGGCCGGTTCTGAGGTATCAGCCCTGCTCGGTAGAATGCCTTCTGCTGTTGGTTACCAGCCTA
CCCTGGCTGTAGATGTAGGCCAGCTTCAGGAAAGGATTACTTCGACCAAAAAGGGTTCTATTACCTCTGTTCAGGCAATC
TATGTGCCGGCTGATGACCTGACAGACCCGGCACCAGCAACTACCTTTGCCCACCTTGATGCAACAACAGTTTTATCAAG
GCAGATTGCTGAAAAGGGTATATACCCTGCAGTTGACCCCCTCGATTCGACTTCGAGGATACTTGAACCCGGGGTCATAG
GTGAGGAACACTATAAGGTTGCCCGCCAGGTCCAGGAGGTATTACAGCAATATAAGGACCTGCAGGACATTATCGCCATC
CTGGGGATGGATGAACTGTCAGATGAGGATAAGATTATTGTTAACAGGGCCCGCCGGATAGAAAGGTTCTTATCCCAGCC
ATTCTTTGTAGCCGAACAGTTTACCAATACCCCAGGCAAATATGTTCCGATCAAGGAAACCATCAGAGGTTTTAAAGAAA
TTTTAGAAGGTAAACATGATGACCTGCCTGAAGAAGCTTTCTACATGGTGGGAACCATAGATGAAGCGGTAGAAAAAGCC
AAACGGATTAAGGAAGGTGAGTAG

Upstream 100 bases:

>100_bases
AAATTACTGAAATTGTGGGTGGAGCAGAAGCCCTTAAATAATCCAATACAGATCTTTAATGTTTTTTAGTTCTATCCCAT
TGATAAAAGGAGGAATAGCC

Downstream 100 bases:

>100_bases
CCCATGCCTTCCACAATAAGGCTTGAGGTTGTTACCCCTGAGAAGGTTGTCTTCAGTGAACCTGTTAATATTTTAATTGC
TCCGGCTATCGATGGGGAAA

Product: ATP synthase F1 subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MSEAKNVGRVVQVIGPVVDVEFPGGHLPEIYNAIEIVGDNRKISQEGPHNEDNEPGEPIRLMAEVMHQLGDNRVRCVAMS
STDGLVRGMEARDLGEPITVPVGEEVLGRLFNVLGEPIDKQGPVDTEEKLPIHRPAPSYEEQETTTEVFETGIKVIDLLA
PYAKGGKVGLFGGAGVGKTVLIQELIHNIAIEHGGYSVFSGVGERTREGNDLWLEFQEADILDKVALVFGQMNEPPGARM
RVGLTGLTMAEYFRDKEGQDVLLFIDNIFRFIQAGSEVSALLGRMPSAVGYQPTLAVDVGQLQERITSTKKGSITSVQAI
YVPADDLTDPAPATTFAHLDATTVLSRQIAEKGIYPAVDPLDSTSRILEPGVIGEEHYKVARQVQEVLQQYKDLQDIIAI
LGMDELSDEDKIIVNRARRIERFLSQPFFVAEQFTNTPGKYVPIKETIRGFKEILEGKHDDLPEEAFYMVGTIDEAVEKA
KRIKEGE

Sequences:

>Translated_487_residues
MSEAKNVGRVVQVIGPVVDVEFPGGHLPEIYNAIEIVGDNRKISQEGPHNEDNEPGEPIRLMAEVMHQLGDNRVRCVAMS
STDGLVRGMEARDLGEPITVPVGEEVLGRLFNVLGEPIDKQGPVDTEEKLPIHRPAPSYEEQETTTEVFETGIKVIDLLA
PYAKGGKVGLFGGAGVGKTVLIQELIHNIAIEHGGYSVFSGVGERTREGNDLWLEFQEADILDKVALVFGQMNEPPGARM
RVGLTGLTMAEYFRDKEGQDVLLFIDNIFRFIQAGSEVSALLGRMPSAVGYQPTLAVDVGQLQERITSTKKGSITSVQAI
YVPADDLTDPAPATTFAHLDATTVLSRQIAEKGIYPAVDPLDSTSRILEPGVIGEEHYKVARQVQEVLQQYKDLQDIIAI
LGMDELSDEDKIIVNRARRIERFLSQPFFVAEQFTNTPGKYVPIKETIRGFKEILEGKHDDLPEEAFYMVGTIDEAVEKA
KRIKEGE
>Mature_486_residues
SEAKNVGRVVQVIGPVVDVEFPGGHLPEIYNAIEIVGDNRKISQEGPHNEDNEPGEPIRLMAEVMHQLGDNRVRCVAMSS
TDGLVRGMEARDLGEPITVPVGEEVLGRLFNVLGEPIDKQGPVDTEEKLPIHRPAPSYEEQETTTEVFETGIKVIDLLAP
YAKGGKVGLFGGAGVGKTVLIQELIHNIAIEHGGYSVFSGVGERTREGNDLWLEFQEADILDKVALVFGQMNEPPGARMR
VGLTGLTMAEYFRDKEGQDVLLFIDNIFRFIQAGSEVSALLGRMPSAVGYQPTLAVDVGQLQERITSTKKGSITSVQAIY
VPADDLTDPAPATTFAHLDATTVLSRQIAEKGIYPAVDPLDSTSRILEPGVIGEEHYKVARQVQEVLQQYKDLQDIIAIL
GMDELSDEDKIIVNRARRIERFLSQPFFVAEQFTNTPGKYVPIKETIRGFKEILEGKHDDLPEEAFYMVGTIDEAVEKAK
RIKEGE

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=484, Percent_Identity=67.5619834710744, Blast_Score=649, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=356, Percent_Identity=26.9662921348315, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI19913424, Length=335, Percent_Identity=28.955223880597, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI19913426, Length=368, Percent_Identity=26.3586956521739, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI50345984, Length=388, Percent_Identity=26.0309278350515, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI4757810, Length=388, Percent_Identity=26.0309278350515, Blast_Score=105, Evalue=9e-23,
Organism=Escherichia coli, GI1790170, Length=476, Percent_Identity=67.436974789916, Blast_Score=653, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=334, Percent_Identity=30.5389221556886, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790172, Length=385, Percent_Identity=25.7142857142857, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI25144756, Length=490, Percent_Identity=65.5102040816327, Blast_Score=637, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17510931, Length=354, Percent_Identity=27.1186440677966, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17570191, Length=348, Percent_Identity=26.7241379310345, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17565854, Length=350, Percent_Identity=28.5714285714286, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71988080, Length=361, Percent_Identity=25.207756232687, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=361, Percent_Identity=25.207756232687, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=343, Percent_Identity=24.4897959183673, Blast_Score=86, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=475, Percent_Identity=66.7368421052632, Blast_Score=640, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=355, Percent_Identity=27.887323943662, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6319370, Length=365, Percent_Identity=26.027397260274, Blast_Score=103, Evalue=9e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=288, Percent_Identity=26.7361111111111, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24638766, Length=484, Percent_Identity=67.5619834710744, Blast_Score=643, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=482, Percent_Identity=64.1078838174274, Blast_Score=598, Evalue=1e-171,
Organism=Drosophila melanogaster, GI281361666, Length=358, Percent_Identity=27.6536312849162, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24646341, Length=358, Percent_Identity=27.6536312849162, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI17136796, Length=358, Percent_Identity=27.6536312849162, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=28.5714285714286, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI20129479, Length=361, Percent_Identity=27.4238227146814, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24583988, Length=348, Percent_Identity=26.7241379310345, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24583986, Length=348, Percent_Identity=26.7241379310345, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24583984, Length=348, Percent_Identity=26.7241379310345, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24658560, Length=361, Percent_Identity=25.4847645429363, Blast_Score=102, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24638768, Length=109, Percent_Identity=46.7889908256881, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 53602; Mature: 53470

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAKNVGRVVQVIGPVVDVEFPGGHLPEIYNAIEIVGDNRKISQEGPHNEDNEPGEPIR
CCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
LMAEVMHQLGDNRVRCVAMSSTDGLVRGMEARDLGEPITVPVGEEVLGRLFNVLGEPIDK
HHHHHHHHHCCCCEEEEEECCCCHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
QGPVDTEEKLPIHRPAPSYEEQETTTEVFETGIKVIDLLAPYAKGGKVGLFGGAGVGKTV
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
LIQELIHNIAIEHGGYSVFSGVGERTREGNDLWLEFQEADILDKVALVFGQMNEPPGARM
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCEE
RVGLTGLTMAEYFRDKEGQDVLLFIDNIFRFIQAGSEVSALLGRMPSAVGYQPTLAVDVG
EECCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEHH
QLQERITSTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAEKGIYPAVDP
HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
LDSTSRILEPGVIGEEHYKVARQVQEVLQQYKDLQDIIAILGMDELSDEDKIIVNRARRI
CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHH
ERFLSQPFFVAEQFTNTPGKYVPIKETIRGFKEILEGKHDDLPEEAFYMVGTIDEAVEKA
HHHHCCCHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
KRIKEGE
HHCCCCC
>Mature Secondary Structure 
SEAKNVGRVVQVIGPVVDVEFPGGHLPEIYNAIEIVGDNRKISQEGPHNEDNEPGEPIR
CCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
LMAEVMHQLGDNRVRCVAMSSTDGLVRGMEARDLGEPITVPVGEEVLGRLFNVLGEPIDK
HHHHHHHHHCCCCEEEEEECCCCHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
QGPVDTEEKLPIHRPAPSYEEQETTTEVFETGIKVIDLLAPYAKGGKVGLFGGAGVGKTV
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
LIQELIHNIAIEHGGYSVFSGVGERTREGNDLWLEFQEADILDKVALVFGQMNEPPGARM
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCEE
RVGLTGLTMAEYFRDKEGQDVLLFIDNIFRFIQAGSEVSALLGRMPSAVGYQPTLAVDVG
EECCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEHH
QLQERITSTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAEKGIYPAVDP
HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
LDSTSRILEPGVIGEEHYKVARQVQEVLQQYKDLQDIIAILGMDELSDEDKIIVNRARRI
CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHH
ERFLSQPFFVAEQFTNTPGKYVPIKETIRGFKEILEGKHDDLPEEAFYMVGTIDEAVEKA
HHHHCCCHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
KRIKEGE
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA