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The map label for this gene is yitU [H]

Identifier: 220932448

GI number: 220932448

Start: 1727844

End: 1728647

Strand: Reverse

Name: yitU [H]

Synonym: Hore_16120

Alternate gene names: 220932448

Gene position: 1728647-1727844 (Counterclockwise)

Preceding gene: 220932449

Following gene: 220932447

Centisome position: 67.05

GC content: 40.3

Gene sequence:

>804_bases
ATGAAAGAATATAGAATGGTAGCTATGGATCTGGATGGAACCCTGATTGATGAGAATCAGAATCTAAGTCAGGTTACAAT
TGATGTTATAACTGAGCTTATGAACCGGGGAGTAATATGTGTTATCGCCACAGGCAGGATGTTTATTTCGGCTCTACCTT
ATGTAAGAAAGCTGGGGATAAAAAAACCGGTTATTACCTATAACGGAGCCTTTATCAAAGACCCTGTGACCAATAAAGTT
TTACATCATAAACCAATTCCACTTAATCTGGCAGGACAGGTTATCAAAATTACTGAAGAATACGGTAACCATATAAATCT
CTATGAAGATGACCGGCTTCTGGTTGCCAGGCGGAATGAAGAAACCCTGTTATATGAAGATATAGCCGGGGTTAAGGCCC
GTGAAGTTGGTCCCCTTTCAGATTATCTTGGAAAACCACCCACCAAGTTGTTAATAATTGAGAGGGATAGGGATAAATAC
GAGGCTATTTACAGGGAAATAAGATTACAATTGGAAGATGACCTGGCCGTAACCAGGTCACGGGATATATTTATTGAAAT
CATGGGAAAAGAGATTTCTAAAGGTAAAGCTTTAGAAAAAGTTGCATCTGGTTTTGAAATCCCCCTGTCACAGGTTATAG
CCATCGGGGATAGCTGGAATGACCTGGAAATGATTAAAGCTGCGGGACTGGGGGTAGCCATGGGTAATTCCCCGGAACAG
ATTAAAGCAGAGGCGGATTTAGTGACATTATCCAATAAAGAAAATGGAGTTGCCAGGATATTAGAAAAGGTATTATTACA
CTAG

Upstream 100 bases:

>100_bases
TCAGGCAAGAAGTTTACAGGCTTTCTGAAAGGTTTCCAAAGACAGCGGAATAACATTATAAGTTACAATTACAATTAATA
CGAAACGGGAGAGACAGGTA

Downstream 100 bases:

>100_bases
GGTTTTAAAAATTTGGTGGTATTTTCAATATTATTTAATTACAATTAATAATATTTTTTAAGATTTTAGTAACATTCATA
ATTACTCCAGGATAGAAATA

Product: Cof-like hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKEYRMVAMDLDGTLIDENQNLSQVTIDVITELMNRGVICVIATGRMFISALPYVRKLGIKKPVITYNGAFIKDPVTNKV
LHHKPIPLNLAGQVIKITEEYGNHINLYEDDRLLVARRNEETLLYEDIAGVKAREVGPLSDYLGKPPTKLLIIERDRDKY
EAIYREIRLQLEDDLAVTRSRDIFIEIMGKEISKGKALEKVASGFEIPLSQVIAIGDSWNDLEMIKAAGLGVAMGNSPEQ
IKAEADLVTLSNKENGVARILEKVLLH

Sequences:

>Translated_267_residues
MKEYRMVAMDLDGTLIDENQNLSQVTIDVITELMNRGVICVIATGRMFISALPYVRKLGIKKPVITYNGAFIKDPVTNKV
LHHKPIPLNLAGQVIKITEEYGNHINLYEDDRLLVARRNEETLLYEDIAGVKAREVGPLSDYLGKPPTKLLIIERDRDKY
EAIYREIRLQLEDDLAVTRSRDIFIEIMGKEISKGKALEKVASGFEIPLSQVIAIGDSWNDLEMIKAAGLGVAMGNSPEQ
IKAEADLVTLSNKENGVARILEKVLLH
>Mature_267_residues
MKEYRMVAMDLDGTLIDENQNLSQVTIDVITELMNRGVICVIATGRMFISALPYVRKLGIKKPVITYNGAFIKDPVTNKV
LHHKPIPLNLAGQVIKITEEYGNHINLYEDDRLLVARRNEETLLYEDIAGVKAREVGPLSDYLGKPPTKLLIIERDRDKY
EAIYREIRLQLEDDLAVTRSRDIFIEIMGKEISKGKALEKVASGFEIPLSQVIAIGDSWNDLEMIKAAGLGVAMGNSPEQ
IKAEADLVTLSNKENGVARILEKVLLH

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=273, Percent_Identity=28.9377289377289, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1786982, Length=271, Percent_Identity=26.5682656826568, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI48994981, Length=271, Percent_Identity=29.520295202952, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081741, Length=240, Percent_Identity=24.1666666666667, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: NA

Molecular weight: Translated: 29925; Mature: 29925

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYRMVAMDLDGTLIDENQNLSQVTIDVITELMNRGVICVIATGRMFISALPYVRKLGI
CCCEEEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCC
KKPVITYNGAFIKDPVTNKVLHHKPIPLNLAGQVIKITEEYGNHINLYEDDRLLVARRNE
CCCEEEECCEEEECCCHHHHHCCCCCCCCCCCCEEEEEHHHCCEECEEECCEEEEEECCC
ETLLYEDIAGVKAREVGPLSDYLGKPPTKLLIIERDRDKYEAIYREIRLQLEDDLAVTRS
CEEEEHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECC
RDIFIEIMGKEISKGKALEKVASGFEIPLSQVIAIGDSWNDLEMIKAAGLGVAMGNSPEQ
CCEEEEEECCCCCCCHHHHHHHCCCCCCHHHEEEECCCCCHHHHHHHCCCEEEECCCHHH
IKAEADLVTLSNKENGVARILEKVLLH
EEECEEEEEECCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKEYRMVAMDLDGTLIDENQNLSQVTIDVITELMNRGVICVIATGRMFISALPYVRKLGI
CCCEEEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCC
KKPVITYNGAFIKDPVTNKVLHHKPIPLNLAGQVIKITEEYGNHINLYEDDRLLVARRNE
CCCEEEECCEEEECCCHHHHHCCCCCCCCCCCCEEEEEHHHCCEECEEECCEEEEEECCC
ETLLYEDIAGVKAREVGPLSDYLGKPPTKLLIIERDRDKYEAIYREIRLQLEDDLAVTRS
CEEEEHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECC
RDIFIEIMGKEISKGKALEKVASGFEIPLSQVIAIGDSWNDLEMIKAAGLGVAMGNSPEQ
CCEEEEEECCCCCCCHHHHHHHCCCCCCHHHEEEECCCCCHHHHHHHCCCEEEECCCHHH
IKAEADLVTLSNKENGVARILEKVLLH
EEECEEEEEECCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9025291; 9384377 [H]