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The map label for this gene is comE [H]

Identifier: 220932103

GI number: 220932103

Start: 1358610

End: 1359767

Strand: Reverse

Name: comE [H]

Synonym: Hore_12660

Alternate gene names: 220932103

Gene position: 1359767-1358610 (Counterclockwise)

Preceding gene: 220932104

Following gene: 220932102

Centisome position: 52.74

GC content: 35.58

Gene sequence:

>1158_bases
ATGGACAGGTCTATCAGGATTAATGTTTTAGTATTAATTTTTTTGTTAATCACCACTGGGGTGCTGCTGGCAGATGAAAG
TCAACCCCGGGTTACAATTGTGTTTTATGAGACACCATTACGGGAAGCCCTCAATGAAATTTCACTGCAAACGGGAGTAA
ATATTATACCTGATTATACAGTAGAGGGTGTTGTTACGGCAGATTTAAATAATGTTCCCCTGGAAAAGGCTCTGGAAATA
ATATTATCTGGTGGGGGTTATACCTTTTACCATAAGGATAACTATTATCTGGTTGGACTGGCTGACCCCGGGAGTCGGAA
TTTTGGTGACCTGATCAATACCAGGATTGTTGACCTGGAGAATGTATCTGTCAGCACAGTATTATCAATACTTCCTCCCC
ACCTTAAAGATTATGTTTATGGAAACCATAAAGGAGACATGTTATCTATTTCTGCACCGCCGACAAAGATGGAAAAAATA
ATTAATCTTATTAAGAGGATTGATAAACCTAGAAAACAGATTAAAATTACAGTAGTAGTCAGTGAAGTTTCAACAAAAGA
ACTCAAAAAACTGGGGACAGGTTTTCTTGAATATCGGGAAAAGGATAATCCATCTTTAAACTTAAAATATGATGGGTCAT
CACTGGTTTTAAATGGTAATATATTCGAAAATTTGTTGACCAGACTTGAAATTTTACAGGAAGAGGAAAAGGCTAAAATA
CATGCTGACCCCAGTATTGTCGTCATGGATGGAGAGCCAGCGGAGTTATTCATTGGAGAAAAACAGACCTTATTTATTAC
AGAGGATGAGGAAATAGAGTACTTTAAAGATATTAAAGTGGGTATTTCTTTAAAAGTAACCCCCAGGTTAATTTCTAAAG
ATGAAATGATACTTGATTTCTCACCTTCAATAAGCCATTTCGTAAATTCTAAATTACCTGAAATAGCAGTTAGAGAAAAC
ACACTTGATACTACAGTCAGGGTAGCAAGTGGTCAGACAGCGGTTATAGCCGGTATGACTTTACAGGATGATTATAATTA
TAAAAAGTCTGTACCTGGATTAAATAAAATTCCTTTATTAAGATGGCTTTTTACCAAAAAAGTAAATGATACCGGAGATA
GAGAATTATTAATATTTGTGACTCCAACAATTAAGTAG

Upstream 100 bases:

>100_bases
ATATTTACAGTATATAAAGAAGAAAAAGTAATAAAAAAGAAGGAGATACCTGTTTCTATCAGGGTTATTAAATAAAAAGA
CGAAAACAGGGGGTACACTT

Downstream 100 bases:

>100_bases
GAGGACAGTTATATGATAGATAGCAGGGTTTTTGTTGTTGCTTTAAGTTTCCTGATAATATTACTGGCTGGACTCCCTGT
CCAGGCCAGTGGTAAGATAG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: DNA transformation protein ComE [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MDRSIRINVLVLIFLLITTGVLLADESQPRVTIVFYETPLREALNEISLQTGVNIIPDYTVEGVVTADLNNVPLEKALEI
ILSGGGYTFYHKDNYYLVGLADPGSRNFGDLINTRIVDLENVSVSTVLSILPPHLKDYVYGNHKGDMLSISAPPTKMEKI
INLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNPSLNLKYDGSSLVLNGNIFENLLTRLEILQEEEKAKI
HADPSIVVMDGEPAELFIGEKQTLFITEDEEIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFVNSKLPEIAVREN
TLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVNDTGDRELLIFVTPTIK

Sequences:

>Translated_385_residues
MDRSIRINVLVLIFLLITTGVLLADESQPRVTIVFYETPLREALNEISLQTGVNIIPDYTVEGVVTADLNNVPLEKALEI
ILSGGGYTFYHKDNYYLVGLADPGSRNFGDLINTRIVDLENVSVSTVLSILPPHLKDYVYGNHKGDMLSISAPPTKMEKI
INLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNPSLNLKYDGSSLVLNGNIFENLLTRLEILQEEEKAKI
HADPSIVVMDGEPAELFIGEKQTLFITEDEEIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFVNSKLPEIAVREN
TLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVNDTGDRELLIFVTPTIK
>Mature_385_residues
MDRSIRINVLVLIFLLITTGVLLADESQPRVTIVFYETPLREALNEISLQTGVNIIPDYTVEGVVTADLNNVPLEKALEI
ILSGGGYTFYHKDNYYLVGLADPGSRNFGDLINTRIVDLENVSVSTVLSILPPHLKDYVYGNHKGDMLSISAPPTKMEKI
INLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNPSLNLKYDGSSLVLNGNIFENLLTRLEILQEEEKAKI
HADPSIVVMDGEPAELFIGEKQTLFITEDEEIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFVNSKLPEIAVREN
TLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVNDTGDRELLIFVTPTIK

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG4796

COG function: function code U; Type II secretory pathway, component HofQ

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=287, Percent_Identity=25.4355400696864, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR013355
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR001814 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 43193; Mature: 43193

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRSIRINVLVLIFLLITTGVLLADESQPRVTIVFYETPLREALNEISLQTGVNIIPDYT
CCCEEEHHHHHHHHHHHHCCEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCEECCCCC
VEGVVTADLNNVPLEKALEIILSGGGYTFYHKDNYYLVGLADPGSRNFGDLINTRIVDLE
CCEEEEECCCCCCHHHHHHEEECCCCEEEEECCCEEEEEECCCCCCCHHHHHHCEEEEEC
NVSVSTVLSILPPHLKDYVYGNHKGDMLSISAPPTKMEKIINLIKRIDKPRKQIKITVVV
CCCHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEE
SEVSTKELKKLGTGFLEYREKDNPSLNLKYDGSSLVLNGNIFENLLTRLEILQEEEKAKI
ECCCHHHHHHHCCHHHHHHCCCCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHCCEE
HADPSIVVMDGEPAELFIGEKQTLFITEDEEIEYFKDIKVGISLKVTPRLISKDEMILDF
ECCCEEEEECCCCCEEEECCCEEEEEECCCCHHHEEEEEEEEEEEECHHCCCCCCEEEEE
SPSISHFVNSKLPEIAVRENTLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLL
CCCHHHHHCCCCCCEEEECCCCCEEEEEECCCEEEEEEEEEECCCCHHHCCCCCCCCHHH
RWLFTKKVNDTGDRELLIFVTPTIK
HHHHHHCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MDRSIRINVLVLIFLLITTGVLLADESQPRVTIVFYETPLREALNEISLQTGVNIIPDYT
CCCEEEHHHHHHHHHHHHCCEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCEECCCCC
VEGVVTADLNNVPLEKALEIILSGGGYTFYHKDNYYLVGLADPGSRNFGDLINTRIVDLE
CCEEEEECCCCCCHHHHHHEEECCCCEEEEECCCEEEEEECCCCCCCHHHHHHCEEEEEC
NVSVSTVLSILPPHLKDYVYGNHKGDMLSISAPPTKMEKIINLIKRIDKPRKQIKITVVV
CCCHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEE
SEVSTKELKKLGTGFLEYREKDNPSLNLKYDGSSLVLNGNIFENLLTRLEILQEEEKAKI
ECCCHHHHHHHCCHHHHHHCCCCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHCCEE
HADPSIVVMDGEPAELFIGEKQTLFITEDEEIEYFKDIKVGISLKVTPRLISKDEMILDF
ECCCEEEEECCCCCEEEECCCEEEEEECCCCHHHEEEEEEEEEEEECHHCCCCCCEEEEE
SPSISHFVNSKLPEIAVRENTLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLL
CCCHHHHHCCCCCCEEEECCCCCEEEEEECCCEEEEEEEEEECCCCHHHCCCCCCCCHHH
RWLFTKKVNDTGDRELLIFVTPTIK
HHHHHHCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1916268; 7542800; 1856167 [H]