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The map label for this gene is yfjD [C]

Identifier: 220932093

GI number: 220932093

Start: 1349170

End: 1350432

Strand: Reverse

Name: yfjD [C]

Synonym: Hore_12560

Alternate gene names: 220932093

Gene position: 1350432-1349170 (Counterclockwise)

Preceding gene: 220932094

Following gene: 220932092

Centisome position: 52.38

GC content: 35.95

Gene sequence:

>1263_bases
ATGATATATAACGGTATTGGGTTAATCATATTATTTATTTTATCTGGATTTTTTTCCGGTGCAGAAACTGCTTTGATGTC
AGTTAATAGGATTCGTATTAAAGAACTGGCCAATCAGGGCGATAAAAGGGCAAGGCTGGTCGACAGTCTTTTAAATAATA
AAACCAGATTATTGACCACTATTTTAATAGGTAATAACCTGGTTAATATATGGGCCTCGGCCATTGCTACATCTATAGCC
ATTTCCCTGTTTGGTAACAAAGGTGTCGGGATCGCTACAGGTGTTGTTACCCTGCTGGTTCTTATCTTTGGTGAGATAAC
TCCTAAAGCTATGGGGAGTAAAAAGGCAGTCCGGTACTCAAAATTTAGTTCAATTTATTTATACTGGCTGGAAAGGGTTC
TTTATCCAGTGGTTGTTTTTTTTGAGTATTTAATAAAAATATTTGTTGATAATGAAGATCTTCTATCATCAAAATTATTG
AGTGAAGAAGAGATTAAACGGTTTGTAAATGTCAGTGAAGAAGAAGGGGTCATCAAAACCGATGAACGTAGAATGATAAA
TAGTATTTTTGAATTTGATGATACAACGGTTAAGGAAATAATGGTTCCCAGAATAGATATGGTCTGTATTAAAAGTGATA
CTGAACTCTCTGAAGTTATAAAAATAGCTGTAGACAGGGGTCATTCCCGTATTCCGGTTTATAAAAATACTATTGATGAA
ATAATCGGTGTAGTTTATGTTAAAGATTTACTCGGGTATTTAACCAAACCTGAGAATGATGCCAGACTGGCTGATTTTAT
AAGGTCTCCTTATTATGTTCCTGAAAGTAAGAAAATTAATGAACTCTTAACAGAAATGAAGAAAAAGAAAGTCCATATGG
CCATTGTTCTTGATGAGTATGGGGGAACATCGGGTCTGGTCACCATTGAAGATATCCTGGAAGAGATTGTCGGGGATATT
CAGGATGAATATGATACTGAGCCCAGCCAGATAGAATTTATCAATGATAAAGAATTATTAATTGATGCCCGGGTAGATAT
AGATGACCTTAACGAGATCCTTCCAGAACCACTACCAGGGGAAGAAGATTATGAAACTATTAGTGGGTTTATTTTACATT
ATCTGGGGTATGTCCCCAAAACGGGTGAAGAGCTTGAGCTGGATGGACTTCATATCCTGGTAGAAGAAAGCAGCAAACAT
CAGATTAAAAAAGTCAGGTTAAAAAGTTCTACCAAACTTAATAGAATAAAGGAAGGGGGGTAA

Upstream 100 bases:

>100_bases
TTTTTATAAATAAACAAACCGTACTTTTGTTTTACAATAACCCTGCTTTGGTCTATAATTATAAATGAGATGGAAAACAG
CAATAATGAGGGATGAAATT

Downstream 100 bases:

>100_bases
GGGGTTGTTCAGGAGATTAAGAAATTTATTTTTAACAGGTGTTCTGGTATTACTTCCACTCATTGCTTCAGTATATGTTT
TGTGGTTTTTATTTAACAGT

Product: putative membrane CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MIYNGIGLIILFILSGFFSGAETALMSVNRIRIKELANQGDKRARLVDSLLNNKTRLLTTILIGNNLVNIWASAIATSIA
ISLFGNKGVGIATGVVTLLVLIFGEITPKAMGSKKAVRYSKFSSIYLYWLERVLYPVVVFFEYLIKIFVDNEDLLSSKLL
SEEEIKRFVNVSEEEGVIKTDERRMINSIFEFDDTTVKEIMVPRIDMVCIKSDTELSEVIKIAVDRGHSRIPVYKNTIDE
IIGVVYVKDLLGYLTKPENDARLADFIRSPYYVPESKKINELLTEMKKKKVHMAIVLDEYGGTSGLVTIEDILEEIVGDI
QDEYDTEPSQIEFINDKELLIDARVDIDDLNEILPEPLPGEEDYETISGFILHYLGYVPKTGEELELDGLHILVEESSKH
QIKKVRLKSSTKLNRIKEGG

Sequences:

>Translated_420_residues
MIYNGIGLIILFILSGFFSGAETALMSVNRIRIKELANQGDKRARLVDSLLNNKTRLLTTILIGNNLVNIWASAIATSIA
ISLFGNKGVGIATGVVTLLVLIFGEITPKAMGSKKAVRYSKFSSIYLYWLERVLYPVVVFFEYLIKIFVDNEDLLSSKLL
SEEEIKRFVNVSEEEGVIKTDERRMINSIFEFDDTTVKEIMVPRIDMVCIKSDTELSEVIKIAVDRGHSRIPVYKNTIDE
IIGVVYVKDLLGYLTKPENDARLADFIRSPYYVPESKKINELLTEMKKKKVHMAIVLDEYGGTSGLVTIEDILEEIVGDI
QDEYDTEPSQIEFINDKELLIDARVDIDDLNEILPEPLPGEEDYETISGFILHYLGYVPKTGEELELDGLHILVEESSKH
QIKKVRLKSSTKLNRIKEGG
>Mature_420_residues
MIYNGIGLIILFILSGFFSGAETALMSVNRIRIKELANQGDKRARLVDSLLNNKTRLLTTILIGNNLVNIWASAIATSIA
ISLFGNKGVGIATGVVTLLVLIFGEITPKAMGSKKAVRYSKFSSIYLYWLERVLYPVVVFFEYLIKIFVDNEDLLSSKLL
SEEEIKRFVNVSEEEGVIKTDERRMINSIFEFDDTTVKEIMVPRIDMVCIKSDTELSEVIKIAVDRGHSRIPVYKNTIDE
IIGVVYVKDLLGYLTKPENDARLADFIRSPYYVPESKKINELLTEMKKKKVHMAIVLDEYGGTSGLVTIEDILEEIVGDI
QDEYDTEPSQIEFINDKELLIDARVDIDDLNEILPEPLPGEEDYETISGFILHYLGYVPKTGEELELDGLHILVEESSKH
QIKKVRLKSSTKLNRIKEGG

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=419, Percent_Identity=28.1622911694511, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI94681046, Length=330, Percent_Identity=28.7878787878788, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI40068053, Length=335, Percent_Identity=26.5671641791045, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI40068055, Length=335, Percent_Identity=26.5671641791045, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI40068051, Length=293, Percent_Identity=24.2320819112628, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI145693175, Length=402, Percent_Identity=32.089552238806, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1786879, Length=249, Percent_Identity=31.7269076305221, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1790664, Length=419, Percent_Identity=26.2529832935561, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87082033, Length=236, Percent_Identity=27.9661016949153, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1788119, Length=235, Percent_Identity=28.936170212766, Blast_Score=101, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71980512, Length=351, Percent_Identity=24.7863247863248, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6324512, Length=337, Percent_Identity=27.0029673590504, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47452; Mature: 47452

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYNGIGLIILFILSGFFSGAETALMSVNRIRIKELANQGDKRARLVDSLLNNKTRLLTT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
ILIGNNLVNIWASAIATSIAISLFGNKGVGIATGVVTLLVLIFGEITPKAMGSKKAVRYS
HHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHH
KFSSIYLYWLERVLYPVVVFFEYLIKIFVDNEDLLSSKLLSEEEIKRFVNVSEEEGVIKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCEEC
DERRMINSIFEFDDTTVKEIMVPRIDMVCIKSDTELSEVIKIAVDRGHSRIPVYKNTIDE
HHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
IIGVVYVKDLLGYLTKPENDARLADFIRSPYYVPESKKINELLTEMKKKKVHMAIVLDEY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECC
GGTSGLVTIEDILEEIVGDIQDEYDTEPSQIEFINDKELLIDARVDIDDLNEILPEPLPG
CCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCHHHHHHHCCCCCCC
EEDYETISGFILHYLGYVPKTGEELELDGLHILVEESSKHQIKKVRLKSSTKLNRIKEGG
CCHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHCCHHHHHHCCCC
>Mature Secondary Structure
MIYNGIGLIILFILSGFFSGAETALMSVNRIRIKELANQGDKRARLVDSLLNNKTRLLTT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
ILIGNNLVNIWASAIATSIAISLFGNKGVGIATGVVTLLVLIFGEITPKAMGSKKAVRYS
HHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHH
KFSSIYLYWLERVLYPVVVFFEYLIKIFVDNEDLLSSKLLSEEEIKRFVNVSEEEGVIKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCEEC
DERRMINSIFEFDDTTVKEIMVPRIDMVCIKSDTELSEVIKIAVDRGHSRIPVYKNTIDE
HHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
IIGVVYVKDLLGYLTKPENDARLADFIRSPYYVPESKKINELLTEMKKKKVHMAIVLDEY
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECC
GGTSGLVTIEDILEEIVGDIQDEYDTEPSQIEFINDKELLIDARVDIDDLNEILPEPLPG
CCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCHHHHHHHCCCCCCC
EEDYETISGFILHYLGYVPKTGEELELDGLHILVEESSKHQIKKVRLKSSTKLNRIKEGG
CCHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]