| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
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The map label for this gene is recJ [H]
Identifier: 220932058
GI number: 220932058
Start: 1314476
End: 1316920
Strand: Reverse
Name: recJ [H]
Synonym: Hore_12210
Alternate gene names: 220932058
Gene position: 1316920-1314476 (Counterclockwise)
Preceding gene: 220932059
Following gene: 220932057
Centisome position: 51.08
GC content: 35.75
Gene sequence:
>2445_bases ATGAAGAAAAAATGGCAGTTTATTAAACAGAAACTGGATGGTTCTTTAAATGATCTGGAACCAGTTTTACAATCCATCCT TTATAGCCGGGGGATTACTGACAGGGACGAAATAAACCGGTTTTTATCCTGCCGTATTCAGGATCTTCATTCCCCCTTTT TAATGAAAGATATGGGAAAAGCAGTGGACCGGATTTTAACGGCCATTGAAAGTGGTGAGAAGATAATAGTATATGGGGAT TATGATGTTGATGGGATAACCTCAACTGCCCTTCTTTTTTTATATTTTAAAAAAAGGCTTGGTTATGAAGTAGATTATTA TCTTCCCAATCGTTTAAAAGAAGGTTATGGTTTAAATAAAGAAGCCCTCGATAAAATAATAAATAAAAACTATGATCTGA TGTTAACTGTTGATTGTGGGATAAGTGGCCTGGAAGAAGTGGAGTATGCTACGCGGAAGGGTCTGGAGGTAATAGTTACT GATCACCATCAGCCCGCAAAAAAGCTTCCCCCAGCTATAGCTGTACTGGATCCTCACCGTAAAGATGACAAATACCCTTT TAAATACCTGGCGGGAGTAGGTGTTGCCTTTAAGTTGTGTCAGGCTCTTGAAAAAGAGATTAAAGGACATGAGATTTCTG ATTTTTTATTACGGTTAATAGATATTGTTTCCCTGGGTAGTATCGCTGATATAGTCCCCTTACTTGGTGAAAACAGAATT ATCGTGAAACGGGGGTTAAGTGAACTTAATGATACTTCTAATAAAGGGTTAAGGGTGTTAATGGATAAGTTAAGCCTGGA TGGTAAAGATTTAAATGCAGGCCATATCGGTTATATTATGGCCCCACCCTTAAATGCGGCGGGAAGGATGGAAGACCCTT CTCTGGGGATTGAGTTATTGACCACTGACTCCATTGATAAAGCAAAAGAGATAGCTAACAGGTTAATAAATTTAAACAAG AGCAGACAGGCTGAAGAAGAAGAAATCTTTGAAGATGCAGTAAAAATGATCGAAAAAACTGTTGATTTAAATAAAGATAA GGGGATAGTTCTGGCCTCTCCTGACTGGCATCACGGGGTAATAGGGATAGTTGCTTCACGGCTGGTTGAAAAGTATTATC GTCCTGTTATTATGATTTCCCTTGAAGACGGTATTGGCAAAGGGTCCTGTCGTAGTATCGAAGGGCTGAATATTTATAAA GCCCTGGATTTTTGCTCTAGTTATCTACTTTCCTATGGGGGGCACGAGCAGGCAGCTGGTTTAGCTATAAATAAAGAGGA TATAGAACAGTTCCGGGATACTTTTCTTGATTATGTGGACAGTGTTTTATCACCAGAGGATTTAATCCCAGTACTGAAAC TTGATAGTATTTTAAAACCCGGGCAAATTAACTTAAATTTTTATAAAACCCTTAAACAACTTGAGCCCTATGGGGTAGGT AATCCTAAACCCAGATTTTTTCTGAGTAATATGCAATTTAATAAACTGAGGACGGTGGGCAGGGATGGAAAACATTTAAA ATTTACCCTTGATAAGGGTTTGAAGGGTATTGGTTTTGATTTTGGAGATAAGCTTATAGAATTTAAAAATAAAAAGGTGG ACCTGGCTTTTTATTTAACCTTGAACACCTGGAACGGTGCAGAAGAAGTGGAATTACAATTACTTGACGTTAATGTAAAG GAGAGTATTAATTATTATCCCATCTATTTTAAGTCAGATGGTCTTGAGTTTGCTGATAAAAGGGGTTGCCAGAATAGAAT TGAATATATAAATTCTTTAAGGGAAAACAATTCTAAAATAGCAGTATATTTAAATAATACGGCTTTGTTAAAGACTCTCG AGCAAAAATTATCCGAAACGGGTCAAGTTTATACTGGGGGAAGTGACATATTAGAAGAGTTTAATAGACTTAAAAAAGGA ATTTTCTTATTTACCGGTAATAGATTACCTGGAAATTTAAGTGTTAAAGACCTGGTTTTCTGGTCTCTACCTTTTTCAAT TAAACAGATGAAGGGCATAATTAACAGGGTATCCCGAGAAGATAAACTCAGGGTTCATTTGATCTATGGCAAAAAAGAAC ATGATCTGAATGTTAAAATACTTAAAACAATGTTACCAGATAAAGAGTTTCTGCGTAAGTTTTATACTGTTTTACAGCAT TATTACCAAAAAGAATTCCGGGTAAATGAACTGATAGAACGGCATTACCGTAATTATAATAAAAAATTAATAGAAAAAAG CCTCTCCATATTAAAGGAGATTGAGTTAATTAAATTTAATGGAAAGAGGGTTAGTATATTACCTCGTCCTGCAGAAAAAC TGGACTTATCCCGGTCAATGGGTTATAATGAAACTATTACTGCAACAAGGGAATTTGGTAGTTTTTCCACACTTGCTTTT GAGGATAATTTATTTAAATTAATTAATAAATTGAATGAAGATTAA
Upstream 100 bases:
>100_bases ATGTCATGTTCTCAGAGTATTTTTTCTCTGGACAATGATAACCAAAATTTAAGGAGGATTTTCGGAAAAAATCGGGAAAA TAATTAAAAGGTGATAGTTA
Downstream 100 bases:
>100_bases CAGGAGGAGGAAGAGCAATGGAATTAAAAAAGTTTATCAGAGATATCCCGGACTTCCCTAAAAAAGGAATCATTTTTAAG GATATAACCCCACTTTTAAA
Product: single-stranded-DNA-specific exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MKKKWQFIKQKLDGSLNDLEPVLQSILYSRGITDRDEINRFLSCRIQDLHSPFLMKDMGKAVDRILTAIESGEKIIVYGD YDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKEGYGLNKEALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVT DHHQPAKKLPPAIAVLDPHRKDDKYPFKYLAGVGVAFKLCQALEKEIKGHEISDFLLRLIDIVSLGSIADIVPLLGENRI IVKRGLSELNDTSNKGLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGRMEDPSLGIELLTTDSIDKAKEIANRLINLNK SRQAEEEEIFEDAVKMIEKTVDLNKDKGIVLASPDWHHGVIGIVASRLVEKYYRPVIMISLEDGIGKGSCRSIEGLNIYK ALDFCSSYLLSYGGHEQAAGLAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQINLNFYKTLKQLEPYGVG NPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKGLKGIGFDFGDKLIEFKNKKVDLAFYLTLNTWNGAEEVELQLLDVNVK ESINYYPIYFKSDGLEFADKRGCQNRIEYINSLRENNSKIAVYLNNTALLKTLEQKLSETGQVYTGGSDILEEFNRLKKG IFLFTGNRLPGNLSVKDLVFWSLPFSIKQMKGIINRVSREDKLRVHLIYGKKEHDLNVKILKTMLPDKEFLRKFYTVLQH YYQKEFRVNELIERHYRNYNKKLIEKSLSILKEIELIKFNGKRVSILPRPAEKLDLSRSMGYNETITATREFGSFSTLAF EDNLFKLINKLNED
Sequences:
>Translated_814_residues MKKKWQFIKQKLDGSLNDLEPVLQSILYSRGITDRDEINRFLSCRIQDLHSPFLMKDMGKAVDRILTAIESGEKIIVYGD YDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKEGYGLNKEALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVT DHHQPAKKLPPAIAVLDPHRKDDKYPFKYLAGVGVAFKLCQALEKEIKGHEISDFLLRLIDIVSLGSIADIVPLLGENRI IVKRGLSELNDTSNKGLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGRMEDPSLGIELLTTDSIDKAKEIANRLINLNK SRQAEEEEIFEDAVKMIEKTVDLNKDKGIVLASPDWHHGVIGIVASRLVEKYYRPVIMISLEDGIGKGSCRSIEGLNIYK ALDFCSSYLLSYGGHEQAAGLAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQINLNFYKTLKQLEPYGVG NPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKGLKGIGFDFGDKLIEFKNKKVDLAFYLTLNTWNGAEEVELQLLDVNVK ESINYYPIYFKSDGLEFADKRGCQNRIEYINSLRENNSKIAVYLNNTALLKTLEQKLSETGQVYTGGSDILEEFNRLKKG IFLFTGNRLPGNLSVKDLVFWSLPFSIKQMKGIINRVSREDKLRVHLIYGKKEHDLNVKILKTMLPDKEFLRKFYTVLQH YYQKEFRVNELIERHYRNYNKKLIEKSLSILKEIELIKFNGKRVSILPRPAEKLDLSRSMGYNETITATREFGSFSTLAF EDNLFKLINKLNED >Mature_814_residues MKKKWQFIKQKLDGSLNDLEPVLQSILYSRGITDRDEINRFLSCRIQDLHSPFLMKDMGKAVDRILTAIESGEKIIVYGD YDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKEGYGLNKEALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVT DHHQPAKKLPPAIAVLDPHRKDDKYPFKYLAGVGVAFKLCQALEKEIKGHEISDFLLRLIDIVSLGSIADIVPLLGENRI IVKRGLSELNDTSNKGLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGRMEDPSLGIELLTTDSIDKAKEIANRLINLNK SRQAEEEEIFEDAVKMIEKTVDLNKDKGIVLASPDWHHGVIGIVASRLVEKYYRPVIMISLEDGIGKGSCRSIEGLNIYK ALDFCSSYLLSYGGHEQAAGLAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQINLNFYKTLKQLEPYGVG NPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKGLKGIGFDFGDKLIEFKNKKVDLAFYLTLNTWNGAEEVELQLLDVNVK ESINYYPIYFKSDGLEFADKRGCQNRIEYINSLRENNSKIAVYLNNTALLKTLEQKLSETGQVYTGGSDILEEFNRLKKG IFLFTGNRLPGNLSVKDLVFWSLPFSIKQMKGIINRVSREDKLRVHLIYGKKEHDLNVKILKTMLPDKEFLRKFYTVLQH YYQKEFRVNELIERHYRNYNKKLIEKSLSILKEIELIKFNGKRVSILPRPAEKLDLSRSMGYNETITATREFGSFSTLAF EDNLFKLINKLNED
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=593, Percent_Identity=33.8954468802698, Blast_Score=315, Evalue=1e-86,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 92993; Mature: 92993
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKWQFIKQKLDGSLNDLEPVLQSILYSRGITDRDEINRFLSCRIQDLHSPFLMKDMGK CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH AVDRILTAIESGEKIIVYGDYDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKEGYGLNK HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCH EALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVTDHHQPAKKLPPAIAVLDPHR HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCHHHCCCEEEEECCCC KDDKYPFKYLAGVGVAFKLCQALEKEIKGHEISDFLLRLIDIVSLGSIADIVPLLGENRI CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEE IVKRGLSELNDTSNKGLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGRMEDPSLGIELL EEHHCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEE TTDSIDKAKEIANRLINLNKSRQAEEEEIFEDAVKMIEKTVDLNKDKGIVLASPDWHHGV ECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH IGIVASRLVEKYYRPVIMISLEDGIGKGSCRSIEGLNIYKALDFCSSYLLSYGGHEQAAG HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC LAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQINLNFYKTLKQLEPYGVG CEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCC NPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKGLKGIGFDFGDKLIEFKNKKVDLAFYLT CCCCCEEECCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEEE LNTWNGAEEVELQLLDVNVKESINYYPIYFKSDGLEFADKRGCQNRIEYINSLRENNSKI EECCCCCCEEEEEEEEEEHHHCCCEEEEEEECCCCCHHHHCCHHHHHHHHHHHHCCCCEE AVYLNNTALLKTLEQKLSETGQVYTGGSDILEEFNRLKKGIFLFTGNRLPGNLSVKDLVF EEEECCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHEE WSLPFSIKQMKGIINRVSREDKLRVHLIYGKKEHDLNVKILKTMLPDKEFLRKFYTVLQH EECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH YYQKEFRVNELIERHYRNYNKKLIEKSLSILKEIELIKFNGKRVSILPRPAEKLDLSRSM HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCHHHHHHHHHC GYNETITATREFGSFSTLAFEDNLFKLINKLNED CCCCEEEEHHHCCCEEEEEEHHHHHHHHHHHCCC >Mature Secondary Structure MKKKWQFIKQKLDGSLNDLEPVLQSILYSRGITDRDEINRFLSCRIQDLHSPFLMKDMGK CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH AVDRILTAIESGEKIIVYGDYDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKEGYGLNK HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCH EALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVTDHHQPAKKLPPAIAVLDPHR HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCHHHCCCEEEEECCCC KDDKYPFKYLAGVGVAFKLCQALEKEIKGHEISDFLLRLIDIVSLGSIADIVPLLGENRI CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEE IVKRGLSELNDTSNKGLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGRMEDPSLGIELL EEHHCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEE TTDSIDKAKEIANRLINLNKSRQAEEEEIFEDAVKMIEKTVDLNKDKGIVLASPDWHHGV ECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH IGIVASRLVEKYYRPVIMISLEDGIGKGSCRSIEGLNIYKALDFCSSYLLSYGGHEQAAG HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC LAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQINLNFYKTLKQLEPYGVG CEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCC NPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKGLKGIGFDFGDKLIEFKNKKVDLAFYLT CCCCCEEECCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEEE LNTWNGAEEVELQLLDVNVKESINYYPIYFKSDGLEFADKRGCQNRIEYINSLRENNSKI EECCCCCCEEEEEEEEEEHHHCCCEEEEEEECCCCCHHHHCCHHHHHHHHHHHHCCCCEE AVYLNNTALLKTLEQKLSETGQVYTGGSDILEEFNRLKKGIFLFTGNRLPGNLSVKDLVF EEEECCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHEE WSLPFSIKQMKGIINRVSREDKLRVHLIYGKKEHDLNVKILKTMLPDKEFLRKFYTVLQH EECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH YYQKEFRVNELIERHYRNYNKKLIEKSLSILKEIELIKFNGKRVSILPRPAEKLDLSRSM HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCHHHHHHHHHC GYNETITATREFGSFSTLAFEDNLFKLINKLNED CCCCEEEEHHHCCCEEEEEEHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]