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The map label for this gene is ynfJ [C]

Identifier: 220932009

GI number: 220932009

Start: 1266393

End: 1267601

Strand: Reverse

Name: ynfJ [C]

Synonym: Hore_11720

Alternate gene names: 220932009

Gene position: 1267601-1266393 (Counterclockwise)

Preceding gene: 220932010

Following gene: 220932008

Centisome position: 49.17

GC content: 38.05

Gene sequence:

>1209_bases
TTGTTTTATGCCCATATAGTAGATAGTTTTTTAGATATTTTTATAAACAGTTTTATAAATAACCGCAGGAGAAGCTATCT
TATATTGATCTTACCGGCAATTGGAGGATTTATTACTTCAATTATAATATATACTGGAAGTAAGGCAGCCAAAGGTCATG
GAATACCGGCTATTCTGGAAACCATTGAATCTAATAAATACGGTCTTTCATCTAGAGATTTGCTGGTTGAAGGGCTGGCT
TCAGCTATCACCATTGGCTCAGGTGGTTCTGCTGGTAGAATAGGGCCGGTGGTAGAGATCGGGGCAGGGCTCGGGGATAT
TGCAGGGAGAAAATTAAATATGCCTCTCGGTACATACCAGACCCTACTGGGTTGTGGGGCTGCTGCAGGAATTGCAGCAA
TTTTTAATGCCCCGCTGGGGGGAATTATGTTTGCTGTAGAAGTCCTATATACTAACCTGGAGATTAAAAGATTAAGTTTG
ATTGTTATAAGTGCTATTAGTGCTGATGCTATTGTAAGAAATATATCGGGCTACAATCCTATCTTTGATTTGCCCCCATT
TCAGTTAAACCATCCCCTGGAATATATTTTTTATATTATACTGGGAATACTGCTGGGGATATTCTCTAACCTCTTTATAA
AGGGGCTTTACATGGTTACTAACCTGTTTAACAATTTAAAAATTAACTACCATTTAAAACCCATCATTGGAGGTCTGTTT
GTAGGTTTAACCGGTTTTTTTATCCCCCGGGTACTGGGGACAGGTATTCCTGTTATATCAAAAGCTTTTACAAAAAGTTA
TCTATTTAATACTTTGATAATATTAGCTATTTTAAAGATAGTGGCAACCTGCCTGACTCTGGGCTCTGGAGGTTCCGGGG
GTATTTTTGCTCCTGGTTTACTGGTCGGGGCCTCAACAGGTCTTTTTTGTGGGGGTTTTTTAAATACATATTTACCCGGT
ATTGTAACTTCACCTGAATCTTATGGTATTGTAGGAATGGCTGCTTTTATAAGCGGTATAATAAGGGCTCCTTTAACTGC
TGTTTTAATAATCTTTGAGTTAACCGGAAACTATTCACTGATATTACCACTGTTACTGGGGGCTGTTTTAGCCAGTAATA
TTAGTAAACATATTTGCCCGGAATCAATTTATTCACCAAAATTATTCTACCGTGAAATCAGTAACTACCAAAATAAAGTG
AAATCCTGA

Upstream 100 bases:

>100_bases
TTTTATTGCAGGGGGGTGGTTTTATGCAAGAAATTTTTAAAAACAATATTTCTATATTTTCGTAGCAGCAATCATAGGTA
TTGTAACCGGTATCATATCA

Downstream 100 bases:

>100_bases
TAACTTTACATTAAAAAGTTATTATAGTATAATTTACACCATAGTGTAGACGGAGAACCATCATTAAGAATACACCATAG
TGTGGGAGAGAAGTAGTGTG

Product: Chloride channel core

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MFYAHIVDSFLDIFINSFINNRRRSYLILILPAIGGFITSIIIYTGSKAAKGHGIPAILETIESNKYGLSSRDLLVEGLA
SAITIGSGGSAGRIGPVVEIGAGLGDIAGRKLNMPLGTYQTLLGCGAAAGIAAIFNAPLGGIMFAVEVLYTNLEIKRLSL
IVISAISADAIVRNISGYNPIFDLPPFQLNHPLEYIFYIILGILLGIFSNLFIKGLYMVTNLFNNLKINYHLKPIIGGLF
VGLTGFFIPRVLGTGIPVISKAFTKSYLFNTLIILAILKIVATCLTLGSGGSGGIFAPGLLVGASTGLFCGGFLNTYLPG
IVTSPESYGIVGMAAFISGIIRAPLTAVLIIFELTGNYSLILPLLLGAVLASNISKHICPESIYSPKLFYREISNYQNKV
KS

Sequences:

>Translated_402_residues
MFYAHIVDSFLDIFINSFINNRRRSYLILILPAIGGFITSIIIYTGSKAAKGHGIPAILETIESNKYGLSSRDLLVEGLA
SAITIGSGGSAGRIGPVVEIGAGLGDIAGRKLNMPLGTYQTLLGCGAAAGIAAIFNAPLGGIMFAVEVLYTNLEIKRLSL
IVISAISADAIVRNISGYNPIFDLPPFQLNHPLEYIFYIILGILLGIFSNLFIKGLYMVTNLFNNLKINYHLKPIIGGLF
VGLTGFFIPRVLGTGIPVISKAFTKSYLFNTLIILAILKIVATCLTLGSGGSGGIFAPGLLVGASTGLFCGGFLNTYLPG
IVTSPESYGIVGMAAFISGIIRAPLTAVLIIFELTGNYSLILPLLLGAVLASNISKHICPESIYSPKLFYREISNYQNKV
KS
>Mature_402_residues
MFYAHIVDSFLDIFINSFINNRRRSYLILILPAIGGFITSIIIYTGSKAAKGHGIPAILETIESNKYGLSSRDLLVEGLA
SAITIGSGGSAGRIGPVVEIGAGLGDIAGRKLNMPLGTYQTLLGCGAAAGIAAIFNAPLGGIMFAVEVLYTNLEIKRLSL
IVISAISADAIVRNISGYNPIFDLPPFQLNHPLEYIFYIILGILLGIFSNLFIKGLYMVTNLFNNLKINYHLKPIIGGLF
VGLTGFFIPRVLGTGIPVISKAFTKSYLFNTLIILAILKIVATCLTLGSGGSGGIFAPGLLVGASTGLFCGGFLNTYLPG
IVTSPESYGIVGMAAFISGIIRAPLTAVLIIFELTGNYSLILPLLLGAVLASNISKHICPESIYSPKLFYREISNYQNKV
KS

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081943, Length=340, Percent_Identity=30, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786350, Length=351, Percent_Identity=31.9088319088319, Blast_Score=106, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17532615, Length=350, Percent_Identity=24.2857142857143, Blast_Score=68, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6322500, Length=386, Percent_Identity=24.8704663212435, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665008, Length=409, Percent_Identity=25.4278728606357, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 42739; Mature: 42739

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYAHIVDSFLDIFINSFINNRRRSYLILILPAIGGFITSIIIYTGSKAAKGHGIPAILE
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
TIESNKYGLSSRDLLVEGLASAITIGSGGSAGRIGPVVEIGAGLGDIAGRKLNMPLGTYQ
HHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCHHHHCCCCHHHCCCEECCCCHHHH
TLLGCGAAAGIAAIFNAPLGGIMFAVEVLYTNLEIKRLSLIVISAISADAIVRNISGYNP
HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
IFDLPPFQLNHPLEYIFYIILGILLGIFSNLFIKGLYMVTNLFNNLKINYHLKPIIGGLF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHH
VGLTGFFIPRVLGTGIPVISKAFTKSYLFNTLIILAILKIVATCLTLGSGGSGGIFAPGL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
LVGASTGLFCGGFLNTYLPGIVTSPESYGIVGMAAFISGIIRAPLTAVLIIFELTGNYSL
HHHCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHH
ILPLLLGAVLASNISKHICPESIYSPKLFYREISNYQNKVKS
HHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFYAHIVDSFLDIFINSFINNRRRSYLILILPAIGGFITSIIIYTGSKAAKGHGIPAILE
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
TIESNKYGLSSRDLLVEGLASAITIGSGGSAGRIGPVVEIGAGLGDIAGRKLNMPLGTYQ
HHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCHHHHCCCCHHHCCCEECCCCHHHH
TLLGCGAAAGIAAIFNAPLGGIMFAVEVLYTNLEIKRLSLIVISAISADAIVRNISGYNP
HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
IFDLPPFQLNHPLEYIFYIILGILLGIFSNLFIKGLYMVTNLFNNLKINYHLKPIIGGLF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHH
VGLTGFFIPRVLGTGIPVISKAFTKSYLFNTLIILAILKIVATCLTLGSGGSGGIFAPGL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
LVGASTGLFCGGFLNTYLPGIVTSPESYGIVGMAAFISGIIRAPLTAVLIIFELTGNYSL
HHHCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHH
ILPLLLGAVLASNISKHICPESIYSPKLFYREISNYQNKVKS
HHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]