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The map label for this gene is yaaH [H]

Identifier: 220931971

GI number: 220931971

Start: 1226169

End: 1226690

Strand: Reverse

Name: yaaH [H]

Synonym: Hore_11320

Alternate gene names: 220931971

Gene position: 1226690-1226169 (Counterclockwise)

Preceding gene: 220931973

Following gene: 220931965

Centisome position: 47.58

GC content: 42.91

Gene sequence:

>522_bases
ATGACACAAAGATGTCCGCCCAATACCAGGCCATATACCATCAAAGCTGGAGACACCTTTTATAGTCTGGCAAGAAGATT
CAATATATCACTTTCGGCAATTATTTCCGCCAATCCAGAAGCGGACCCAGAATCATTAAGGATTGGACAGAGAATTTGTA
TACCCCGGCAGGAATATTATCCACCCTGTCCGGAAGGAAATTTTTATACAATAAAGAGAGGGGACACCCTTTATAGTATT
GCTCAACGGTTTAGTGTCTCCCTTGATGACCTCCTTGAAGCTAACCCTTTTATCGTTCCGGAGAACCTGGAGGTAGGTAC
AGTCATCTGTATACCCCTGGCCACCCCGCCGGTTGATTGTCCCCCGGGCTCAATAACTTATACAATAAAAAGAGGTGATA
CCTTTTATTCAATAGCCAGAAGGTATAATATAACTGTAGATGAATTAAGAAGAGCCAATCAGGGAATCAATCCTGAAGCC
CTTTTGGTTGGCCAGAAAATATGTATTCCTGACCAGGAATAA

Upstream 100 bases:

>100_bases
AAGTCCTTTTATATACATACTGGTTACATATTATTTTTTCTACAATAATAGCAATTTTTATCTTTCCGAATATAATGAAA
TAAAAGGAAGGAGGGATATC

Downstream 100 bases:

>100_bases
AAAAAGGGAGCACAACCATGCTCCCTTAATATACTTTATTTAATTTGCTTAAGTAAATAAATACTACAGATTACTTTTAA
TCTGTAAAACAATTATTAAT

Product: Peptidoglycan-binding LysM

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTQRCPPNTRPYTIKAGDTFYSLARRFNISLSAIISANPEADPESLRIGQRICIPRQEYYPPCPEGNFYTIKRGDTLYSI
AQRFSVSLDDLLEANPFIVPENLEVGTVICIPLATPPVDCPPGSITYTIKRGDTFYSIARRYNITVDELRRANQGINPEA
LLVGQKICIPDQE

Sequences:

>Translated_173_residues
MTQRCPPNTRPYTIKAGDTFYSLARRFNISLSAIISANPEADPESLRIGQRICIPRQEYYPPCPEGNFYTIKRGDTLYSI
AQRFSVSLDDLLEANPFIVPENLEVGTVICIPLATPPVDCPPGSITYTIKRGDTFYSIARRYNITVDELRRANQGINPEA
LLVGQKICIPDQE
>Mature_172_residues
TQRCPPNTRPYTIKAGDTFYSLARRFNISLSAIISANPEADPESLRIGQRICIPRQEYYPPCPEGNFYTIKRGDTLYSIA
QRFSVSLDDLLEANPFIVPENLEVGTVICIPLATPPVDCPPGSITYTIKRGDTFYSIARRYNITVDELRRANQGINPEAL
LVGQKICIPDQE

Specific function: May be required for the L-alanine-stimulated germination pathway [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

Organism=Caenorhabditis elegans, GI17559362, Length=173, Percent_Identity=26.0115606936416, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 19399; Mature: 19268

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQRCPPNTRPYTIKAGDTFYSLARRFNISLSAIISANPEADPESLRIGQRICIPRQEYY
CCCCCCCCCCCEEEECCCHHHHHHHHHCCEEEEEEECCCCCCHHHHCCCCEECCCCHHCC
PPCPEGNFYTIKRGDTLYSIAQRFSVSLDDLLEANPFIVPENLEVGTVICIPLATPPVDC
CCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCC
PPGSITYTIKRGDTFYSIARRYNITVDELRRANQGINPEALLVGQKICIPDQE
CCCCEEEEEECCCEEEEEHHHCCCCHHHHHHHHCCCCCCEEEECCEECCCCCC
>Mature Secondary Structure 
TQRCPPNTRPYTIKAGDTFYSLARRFNISLSAIISANPEADPESLRIGQRICIPRQEYY
CCCCCCCCCCEEEECCCHHHHHHHHHCCEEEEEEECCCCCCHHHHCCCCEECCCCHHCC
PPCPEGNFYTIKRGDTLYSIAQRFSVSLDDLLEANPFIVPENLEVGTVICIPLATPPVDC
CCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCC
PPGSITYTIKRGDTFYSIARRYNITVDELRRANQGINPEALLVGQKICIPDQE
CCCCEEEEEECCCEEEEEHHHCCCCHHHHHHHHCCCCCCEEEECCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10419957 [H]