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The map label for this gene is uvsE [H]

Identifier: 220931812

GI number: 220931812

Start: 1053338

End: 1054267

Strand: Reverse

Name: uvsE [H]

Synonym: Hore_09690

Alternate gene names: 220931812

Gene position: 1054267-1053338 (Counterclockwise)

Preceding gene: 220931821

Following gene: 220931806

Centisome position: 40.89

GC content: 36.67

Gene sequence:

>930_bases
TTGGATATCCAGAACATTGATTTCGGGTATGCCTGTATCAGTTCAATAATTAAAAACTGTACTACAGCCAGTACTGTACC
TCTGGGAAAATTTAAAAAAATAAAAGATAAAGAAAGCCGTATATATCGACTGGAAAAGGTCGCCCGGAAAAACCTTACCA
ATACTATTAGATTACTCTGGCATAATATTGCAGAAGGAATTAAACTATATCGTTTTTCATCCCAATTAATCCCCCTGGGA
AATCACCCCCTCGGCCAAATCTGGGATTTTACAGAAACACTCAATGAAGAATTATCTAAAATTGGTAATATAGTAAAGAA
GAACGGGTTAAAGGTAAGTACTCACCCGGGGCAATATACTGTAATCAATACTAAACATGAAGAAAAATTTCAGAATGCAA
TAAGGGACCTTAAATACCATGATAGAGTGCTCACTTCTATGGGTCTAGATGAAAATGCAGTAATGGTAGTTCATGTGGGT
GGGGTCTATGGAGATAAAGAAAAGTCCTTAAAAAGGTTTATCACGAATTTTAAACGTCTCCCCGATTCAGTTCAAAAAAG
AATAGTTGTTGAAAACGATGATACCAATTATACAATCAAGGATGTTCTTACTATTTGCCAGGAAATAAACCGTCCAATGG
TACTGGATGTTCACCATCACGCCTATAACAATCAGGGAGAAAATTTAAAAGACTATCTTGAGGATATTTTTTCTACATGG
GACAGGCTTGACAGACCACCAAAAATACATTTTTCCAGCCCAGAAAGCAAAAACGCCCCCCTCAAACATGCAGACTACAT
AAATCCTGAAGAATTCCTGAATTTTTATAAAATCGCCAGGGAATATAAGTTTGATGTAATGGTTGAAGCCAAAAAACAGG
ATGGGGCTGTTTTAAAACTATGGGAAGACCTCGGTATTACGTACAAGTAG

Upstream 100 bases:

>100_bases
TTACTGTATATAAAAGGCAACATAATAAAAAAATAAAACTAAATAAAGATTAACAATATATAATGCTTTTTAATTCAAAA
TAAAAAAAGGAGTTATCTCA

Downstream 100 bases:

>100_bases
TTTATTCTTTTATATAACCCTGTCTTAACTTGTGTTCATATTTCATTTAATCCAGTTTAATAACACTGACTACATTATCC
CCACTGGTTACTCTTATTAC

Product: UV-damage endonuclease

Products: NA

Alternate protein names: UV-endonuclease; UVED [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDIQNIDFGYACISSIIKNCTTASTVPLGKFKKIKDKESRIYRLEKVARKNLTNTIRLLWHNIAEGIKLYRFSSQLIPLG
NHPLGQIWDFTETLNEELSKIGNIVKKNGLKVSTHPGQYTVINTKHEEKFQNAIRDLKYHDRVLTSMGLDENAVMVVHVG
GVYGDKEKSLKRFITNFKRLPDSVQKRIVVENDDTNYTIKDVLTICQEINRPMVLDVHHHAYNNQGENLKDYLEDIFSTW
DRLDRPPKIHFSSPESKNAPLKHADYINPEEFLNFYKIAREYKFDVMVEAKKQDGAVLKLWEDLGITYK

Sequences:

>Translated_309_residues
MDIQNIDFGYACISSIIKNCTTASTVPLGKFKKIKDKESRIYRLEKVARKNLTNTIRLLWHNIAEGIKLYRFSSQLIPLG
NHPLGQIWDFTETLNEELSKIGNIVKKNGLKVSTHPGQYTVINTKHEEKFQNAIRDLKYHDRVLTSMGLDENAVMVVHVG
GVYGDKEKSLKRFITNFKRLPDSVQKRIVVENDDTNYTIKDVLTICQEINRPMVLDVHHHAYNNQGENLKDYLEDIFSTW
DRLDRPPKIHFSSPESKNAPLKHADYINPEEFLNFYKIAREYKFDVMVEAKKQDGAVLKLWEDLGITYK
>Mature_309_residues
MDIQNIDFGYACISSIIKNCTTASTVPLGKFKKIKDKESRIYRLEKVARKNLTNTIRLLWHNIAEGIKLYRFSSQLIPLG
NHPLGQIWDFTETLNEELSKIGNIVKKNGLKVSTHPGQYTVINTKHEEKFQNAIRDLKYHDRVLTSMGLDENAVMVVHVG
GVYGDKEKSLKRFITNFKRLPDSVQKRIVVENDDTNYTIKDVLTICQEINRPMVLDVHHHAYNNQGENLKDYLEDIFSTW
DRLDRPPKIHFSSPESKNAPLKHADYINPEEFLNFYKIAREYKFDVMVEAKKQDGAVLKLWEDLGITYK

Specific function: Component in a DNA repair pathway. Removal of UV-light damaged nucleotides. Recognizes pyrimidine dimers and cleave a phosphodiester bond immediately 5' to the lesion [H]

COG id: COG4294

COG function: function code L; UV damage repair endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the uve1/uvsE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004601
- InterPro:   IPR013022 [H]

Pfam domain/function: PF03851 UvdE [H]

EC number: NA

Molecular weight: Translated: 35858; Mature: 35858

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIQNIDFGYACISSIIKNCTTASTVPLGKFKKIKDKESRIYRLEKVARKNLTNTIRLLW
CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HNIAEGIKLYRFSSQLIPLGNHPLGQIWDFTETLNEELSKIGNIVKKNGLKVSTHPGQYT
HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEE
VINTKHEEKFQNAIRDLKYHDRVLTSMGLDENAVMVVHVGGVYGDKEKSLKRFITNFKRL
EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
PDSVQKRIVVENDDTNYTIKDVLTICQEINRPMVLDVHHHAYNNQGENLKDYLEDIFSTW
CHHHHCCEEEECCCCCEEHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHHH
DRLDRPPKIHFSSPESKNAPLKHADYINPEEFLNFYKIAREYKFDVMVEAKKQDGAVLKL
HHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEE
WEDLGITYK
HHHCCCCCC
>Mature Secondary Structure
MDIQNIDFGYACISSIIKNCTTASTVPLGKFKKIKDKESRIYRLEKVARKNLTNTIRLLW
CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HNIAEGIKLYRFSSQLIPLGNHPLGQIWDFTETLNEELSKIGNIVKKNGLKVSTHPGQYT
HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEE
VINTKHEEKFQNAIRDLKYHDRVLTSMGLDENAVMVVHVGGVYGDKEKSLKRFITNFKRL
EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
PDSVQKRIVVENDDTNYTIKDVLTICQEINRPMVLDVHHHAYNNQGENLKDYLEDIFSTW
CHHHHCCEEEECCCCCEEHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHHH
DRLDRPPKIHFSSPESKNAPLKHADYINPEEFLNFYKIAREYKFDVMVEAKKQDGAVLKL
HHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEE
WEDLGITYK
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA