Click here to switch to the map view.

The map label for this gene is ylmH [H]

Identifier: 220931768

GI number: 220931768

Start: 996228

End: 997016

Strand: Direct

Name: ylmH [H]

Synonym: Hore_09250

Alternate gene names: 220931768

Gene position: 996228-997016 (Clockwise)

Preceding gene: 220931767

Following gene: 220931769

Centisome position: 38.64

GC content: 38.4

Gene sequence:

>789_bases
ATGTTTAATCGGGAAAAAATGTTATCACATTTACACACTGCAGAGGAGCAAAACCTCGGAGGTCAGATACTGGATAAAAT
AGAAATAGTTGTAAAAAGGAAATCAGAGGTATCTACTAATTTTTTAAATCCCCATGAGCAAAGTATTGCAGAAGGTTTAA
TAAAACAGGTATATGATATAAATTACAAAATTGACGGAGGTTATGACAGGGCTGAACGGAAACGGGTTACTCTTTTTCCC
GATTATCTGTATCCGGAACATGTAAAAACCCCTGTTTGTATTCTGAAAGTTGAGGGGAATTTTAAATTTAATTCTGTCAG
TCACCGTGATTTTCTGGGAGCTATCCTGGGATTGGGAATTAAAAGGGAGATGATTGGAGATATCCTAATCCTTAAAGATT
TTGCCGAGGTAGTTGTGGCAGAGGAGATTAAAGAATATATATGTTTAAGGTTGAAAAAAGTTCACCAGGTTCCGGTAAAT
GTTGAAGAATTAGACAGGGAAAATGTAGTTATTCCAGCAGAGAACACCAGGGAATTTACGACCACTGTTCCCTCGATGCG
CCTGGATGCAGTCTCCAGTGCTGGCTTTGGTGATTCCCGGAATAAAATAAGTCGGATTATAAAATCTGAGAAGGTTAAGG
TAAACTGGAAAAAGGAGAATAACCCTGCCCAGACTGTAGAGATTGGTGACCTTATTTCTATTAAGGGTAGAGGGAGGGTA
CAGATAGTTAAAAATGAAGGCCTTTCCCACCGGGGGAGGGTAAAATTAAGATTAAAAAGGTTTTTATAG

Upstream 100 bases:

>100_bases
GGGTATAGATTTTTCACCATTTATTGCTATTATAATTTTGTCTTTATTGAGAATTATTCTGGTAAGTCTGGTTAATGCCT
TTTAAGGAGTGGTTTTTTAA

Downstream 100 bases:

>100_bases
AAAGGAGGGCTCAAGGTGAGACTTTCACCACTGGATATTTATAATAAAGAGTTTAAGAAGACTACTTTTGGTTATAGCCA
GGCCCAGGTTGACGAATTTC

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFNREKMLSHLHTAEEQNLGGQILDKIEIVVKRKSEVSTNFLNPHEQSIAEGLIKQVYDINYKIDGGYDRAERKRVTLFP
DYLYPEHVKTPVCILKVEGNFKFNSVSHRDFLGAILGLGIKREMIGDILILKDFAEVVVAEEIKEYICLRLKKVHQVPVN
VEELDRENVVIPAENTREFTTTVPSMRLDAVSSAGFGDSRNKISRIIKSEKVKVNWKKENNPAQTVEIGDLISIKGRGRV
QIVKNEGLSHRGRVKLRLKRFL

Sequences:

>Translated_262_residues
MFNREKMLSHLHTAEEQNLGGQILDKIEIVVKRKSEVSTNFLNPHEQSIAEGLIKQVYDINYKIDGGYDRAERKRVTLFP
DYLYPEHVKTPVCILKVEGNFKFNSVSHRDFLGAILGLGIKREMIGDILILKDFAEVVVAEEIKEYICLRLKKVHQVPVN
VEELDRENVVIPAENTREFTTTVPSMRLDAVSSAGFGDSRNKISRIIKSEKVKVNWKKENNPAQTVEIGDLISIKGRGRV
QIVKNEGLSHRGRVKLRLKRFL
>Mature_262_residues
MFNREKMLSHLHTAEEQNLGGQILDKIEIVVKRKSEVSTNFLNPHEQSIAEGLIKQVYDINYKIDGGYDRAERKRVTLFP
DYLYPEHVKTPVCILKVEGNFKFNSVSHRDFLGAILGLGIKREMIGDILILKDFAEVVVAEEIKEYICLRLKKVHQVPVN
VEELDRENVVIPAENTREFTTTVPSMRLDAVSSAGFGDSRNKISRIIKSEKVKVNWKKENNPAQTVEIGDLISIKGRGRV
QIVKNEGLSHRGRVKLRLKRFL

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29976; Mature: 29976

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNREKMLSHLHTAEEQNLGGQILDKIEIVVKRKSEVSTNFLNPHEQSIAEGLIKQVYDI
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHC
NYKIDGGYDRAERKRVTLFPDYLYPEHVKTPVCILKVEGNFKFNSVSHRDFLGAILGLGI
CEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCEEECCCCHHHHHHHHHCCCC
KREMIGDILILKDFAEVVVAEEIKEYICLRLKKVHQVPVNVEELDRENVVIPAENTREFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEECCCCCCCCE
TTVPSMRLDAVSSAGFGDSRNKISRIIKSEKVKVNWKKENNPAQTVEIGDLISIKGRGRV
ECCCCHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCEEEECCEEEECCCCEE
QIVKNEGLSHRGRVKLRLKRFL
EEEECCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MFNREKMLSHLHTAEEQNLGGQILDKIEIVVKRKSEVSTNFLNPHEQSIAEGLIKQVYDI
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHC
NYKIDGGYDRAERKRVTLFPDYLYPEHVKTPVCILKVEGNFKFNSVSHRDFLGAILGLGI
CEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCEEECCCCHHHHHHHHHCCCC
KREMIGDILILKDFAEVVVAEEIKEYICLRLKKVHQVPVNVEELDRENVVIPAENTREFT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEECCCCCCCCE
TTVPSMRLDAVSSAGFGDSRNKISRIIKSEKVKVNWKKENNPAQTVEIGDLISIKGRGRV
ECCCCHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCEEEECCEEEECCCCEE
QIVKNEGLSHRGRVKLRLKRFL
EEEECCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]