Click here to switch to the map view.

The map label for this gene is nifU [H]

Identifier: 220931732

GI number: 220931732

Start: 957256

End: 957672

Strand: Direct

Name: nifU [H]

Synonym: Hore_08890

Alternate gene names: 220931732

Gene position: 957256-957672 (Clockwise)

Preceding gene: 220931731

Following gene: 220931733

Centisome position: 37.13

GC content: 36.69

Gene sequence:

>417_bases
ATGTATTCTGAAAAAGTAATGGAACACTTCAATAATCCCAGAAATGTCGGTGAGATAAAGGATGCAGATGCGGTAGGAGA
AGTAGGTAATCCTGTTTGTGGGGATATAATAAAACTATATTTAAAGATTAAAGATGATACGATAGAAGATATTAAGTTTA
AAACATTTGGTTGTGGTGCAGCTGTGGCGACCAGTAGTATGGTTACTGAACTGGTAAAAGGAAAAAAAATTGATGAGGCA
TTAAAGGTCAGTAAAGAGACAGTAGCTGAGGCCCTGGATGGTTTGCCATCCAACAAAATGCATTGCTCTAACCTGGCTGC
TGATGCTTTGCATAAAGCTATTAAAAGTTATAATAAGAAGGATAACAGTGATAATTCAGGCAAGGAAAATGATACTCTAG
ATAAGGCAACCAGTTAG

Upstream 100 bases:

>100_bases
ACCGGGGATTATAAAAAAATTAAGGGCTATGTCTCCATTGTTTGATTCAGCTTCTGAGTAAGTTCTCAGCATAGTTTTTA
AAATGGAGGAGATGATAAAA

Downstream 100 bases:

>100_bases
TAATTAACCGGAGAGAAGGAAAGGTGATTCTATGGATAGGGTACTGGTAGCAATGAGTGGTGGAGTTGATAGTTCAGTAA
CAGCAGCATTATTAAAGGAA

Product: nitrogen-fixing NifU domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MYSEKVMEHFNNPRNVGEIKDADAVGEVGNPVCGDIIKLYLKIKDDTIEDIKFKTFGCGAAVATSSMVTELVKGKKIDEA
LKVSKETVAEALDGLPSNKMHCSNLAADALHKAIKSYNKKDNSDNSGKENDTLDKATS

Sequences:

>Translated_138_residues
MYSEKVMEHFNNPRNVGEIKDADAVGEVGNPVCGDIIKLYLKIKDDTIEDIKFKTFGCGAAVATSSMVTELVKGKKIDEA
LKVSKETVAEALDGLPSNKMHCSNLAADALHKAIKSYNKKDNSDNSGKENDTLDKATS
>Mature_138_residues
MYSEKVMEHFNNPRNVGEIKDADAVGEVGNPVCGDIIKLYLKIKDDTIEDIKFKTFGCGAAVATSSMVTELVKGKKIDEA
LKVSKETVAEALDGLPSNKMHCSNLAADALHKAIKSYNKKDNSDNSGKENDTLDKATS

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=125, Percent_Identity=44.8, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI24307953, Length=122, Percent_Identity=45.0819672131148, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI1788878, Length=123, Percent_Identity=52.0325203252033, Blast_Score=126, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17543474, Length=125, Percent_Identity=48, Blast_Score=119, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6324800, Length=127, Percent_Identity=49.6062992125984, Blast_Score=126, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6325122, Length=130, Percent_Identity=49.2307692307692, Blast_Score=125, Evalue=2e-30,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=49.2063492063492, Blast_Score=119, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14937; Mature: 14937

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSEKVMEHFNNPRNVGEIKDADAVGEVGNPVCGDIIKLYLKIKDDTIEDIKFKTFGCGA
CCHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHH
AVATSSMVTELVKGKKIDEALKVSKETVAEALDGLPSNKMHCSNLAADALHKAIKSYNKK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
DNSDNSGKENDTLDKATS
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYSEKVMEHFNNPRNVGEIKDADAVGEVGNPVCGDIIKLYLKIKDDTIEDIKFKTFGCGA
CCHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHH
AVATSSMVTELVKGKKIDEALKVSKETVAEALDGLPSNKMHCSNLAADALHKAIKSYNKK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
DNSDNSGKENDTLDKATS
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]