Click here to switch to the map view.

The map label for this gene is ymfC [H]

Identifier: 220931720

GI number: 220931720

Start: 944335

End: 945069

Strand: Direct

Name: ymfC [H]

Synonym: Hore_08770

Alternate gene names: 220931720

Gene position: 944335-945069 (Clockwise)

Preceding gene: 220931719

Following gene: 220931721

Centisome position: 36.63

GC content: 34.29

Gene sequence:

>735_bases
TTGGACTTAATAAAACAGGACAGCCGCCCCCTTTATTTGCGTGTTAAAGAATATATTGAAAATAAAATTAAAAAAGAAAT
ATATAAACCAGGGGATCGTCTGCCATCAGAAACAGCTTTATCTAATGAACTGGGGGTTAGTAGAGCTACTTTAAGGGAAG
CTTTAAGGGTCCTGGAAGAGGAAGGAAAGATCGTAAAACATCAGGGAATTGGAACATTTGTAAACCAACAAACTCCCAGA
TTCTTAAAGGGGATTGAGGAATTAGTAAGTGTTACCAAGACCATTGAAAACGCCGGTTACACTCCAGGCTCAAAGGTTTT
AAGGTTAGAAGAAATATACCCGGATGACAAATTATCTAAAAAAATGAGACTGGATTCTTCCCATAAAATATTAAAAATCG
AAAGAATACGTACTGCCGACAATCAACCGGTAGTATACTGCCTTGATCATTTAGGATTAAAATATCTAGAAAATGGTATC
AGTAAAAGGGATTTTCAGGGTTCTTTATTTAAATTACTGGAAAATAAATATGGAATTTTTATAAAATACGCCCTGACCCA
TATTGTGCCATATATTACCGACAAAAGTCTGGCTGAAAAACTGGATATTAAAGAAAAAAGCCCGTTACTATTGTTAGAAC
AGTATCATTATGATACTGATGAACGGATGATATTGTTTTCCCAGAATTATTTCAGATCTGACCAGTTTCAATTTAAAGTA
TTAAGAAAGCGTTAA

Upstream 100 bases:

>100_bases
AAACTGGGGTTATGGTATTGTAAAGGTATGATGTCTGACAGGTAAGACTTTTAAAAAATTTCTAATAACTAATATAATTA
ACCAGGAAGGGAGTGGTTAT

Downstream 100 bases:

>100_bases
GTTTTTAGGAAAACGTTAAAGAGAAAAACTTTTTAGAGGGGAGGACTTATTTTATGAATAATGGTGACCCGGTCATCCAG
ATGAACGGTATAACTAAAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MDLIKQDSRPLYLRVKEYIENKIKKEIYKPGDRLPSETALSNELGVSRATLREALRVLEEEGKIVKHQGIGTFVNQQTPR
FLKGIEELVSVTKTIENAGYTPGSKVLRLEEIYPDDKLSKKMRLDSSHKILKIERIRTADNQPVVYCLDHLGLKYLENGI
SKRDFQGSLFKLLENKYGIFIKYALTHIVPYITDKSLAEKLDIKEKSPLLLLEQYHYDTDERMILFSQNYFRSDQFQFKV
LRKR

Sequences:

>Translated_244_residues
MDLIKQDSRPLYLRVKEYIENKIKKEIYKPGDRLPSETALSNELGVSRATLREALRVLEEEGKIVKHQGIGTFVNQQTPR
FLKGIEELVSVTKTIENAGYTPGSKVLRLEEIYPDDKLSKKMRLDSSHKILKIERIRTADNQPVVYCLDHLGLKYLENGI
SKRDFQGSLFKLLENKYGIFIKYALTHIVPYITDKSLAEKLDIKEKSPLLLLEQYHYDTDERMILFSQNYFRSDQFQFKV
LRKR
>Mature_244_residues
MDLIKQDSRPLYLRVKEYIENKIKKEIYKPGDRLPSETALSNELGVSRATLREALRVLEEEGKIVKHQGIGTFVNQQTPR
FLKGIEELVSVTKTIENAGYTPGSKVLRLEEIYPDDKLSKKMRLDSSHKILKIERIRTADNQPVVYCLDHLGLKYLENGI
SKRDFQGSLFKLLENKYGIFIKYALTHIVPYITDKSLAEKLDIKEKSPLLLLEQYHYDTDERMILFSQNYFRSDQFQFKV
LRKR

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=236, Percent_Identity=27.5423728813559, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788418, Length=240, Percent_Identity=24.1666666666667, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790118, Length=227, Percent_Identity=23.3480176211454, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28559; Mature: 28559

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLIKQDSRPLYLRVKEYIENKIKKEIYKPGDRLPSETALSNELGVSRATLREALRVLEE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
EGKIVKHQGIGTFVNQQTPRFLKGIEELVSVTKTIENAGYTPGSKVLRLEEIYPDDKLSK
CCCEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHCCCHHHHH
KMRLDSSHKILKIERIRTADNQPVVYCLDHLGLKYLENGISKRDFQGSLFKLLENKYGIF
HHCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEE
IKYALTHIVPYITDKSLAEKLDIKEKSPLLLLEQYHYDTDERMILFSQNYFRSDQFQFKV
HHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCHHHHH
LRKR
HHCC
>Mature Secondary Structure
MDLIKQDSRPLYLRVKEYIENKIKKEIYKPGDRLPSETALSNELGVSRATLREALRVLEE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
EGKIVKHQGIGTFVNQQTPRFLKGIEELVSVTKTIENAGYTPGSKVLRLEEIYPDDKLSK
CCCEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHCCCHHHHH
KMRLDSSHKILKIERIRTADNQPVVYCLDHLGLKYLENGISKRDFQGSLFKLLENKYGIF
HHCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEE
IKYALTHIVPYITDKSLAEKLDIKEKSPLLLLEQYHYDTDERMILFSQNYFRSDQFQFKV
HHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCHHHHH
LRKR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]