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The map label for this gene is rnjB [H]

Identifier: 220931713

GI number: 220931713

Start: 937182

End: 938858

Strand: Direct

Name: rnjB [H]

Synonym: Hore_08700

Alternate gene names: 220931713

Gene position: 937182-938858 (Clockwise)

Preceding gene: 220931712

Following gene: 220931714

Centisome position: 36.35

GC content: 37.33

Gene sequence:

>1677_bases
ATGCCAAAAAAACATAATATAAATGAAGTAAAGATGATTCCTTTAGGTGGAGTCGGGGAAATAGGTAAAAACATGATGCT
TGTCGAAATGGCTGGAGAGATATTAATTATTGATGCCGGGGTCATGTTTCCTGAAGATGATTTGCTGGGAATTGACCTGG
TAATCCCTGATTTTTCTTATGTAAAGGAAAATGCCAACAGGGTCAAAGGTATTGTTTTAACCCATGGTCATGAGGATCAT
ATCGGGGCTTTACCATACCTGTTAAAAGAAATTAATGTTCCTGTCTTTGGAACTAAATTGACCCTGGGGCTTGTTGAAGG
TAAACTCAAGGAGCATAGAATAAATAAAGGGCGTAAGTTAAAAGTTGTTAACCCAGGTAGTTCAATAAATGTAGGTTCTT
TTAAAGTAGATTTCATACTTGTTAACCATAGTATTGCAGATACCTGTGCTCTGGCCATTCACACACCTTTAGGACCGATT
ATTTATGCCAGTGATTTTAAGTTTGATCAGACACCTATCGATGGTGAAGTAGCAGACTTTCATAAACTGGCCGAACTCGG
TGATAATTACCCCGGAGTACTGGCTTTGTTTGCAGATAGTACCAATGTAGAACGGGAAGGGTATACTCTTTCAGAAAAAG
TAGTTGGTGGTACTATTGACGATATTTTTAGAAAGGCACGTAATAGAATTGTAGTGGCTACTTTTGCTTCCAATATTCAC
CGGGTTCAGCAAATAGTAGATGCTGCCTTTAAATATAACCGTAAGATTGCTTTTACGGGACGGAGTATGATTAATAATAT
AGAAATTGCCAGGGAACTGGGTTATTTAATAATTCCTGAAGATATGATAGTAGATATTAGAAATATATCTAATCTCCCTG
ATGATAAAATTGTGCTTTTAACTACCGGTAGCCAGGGAGAGCCCATGGCAGCATTAACCAGAATGGCCAGGGGTGATCAT
TATCATATAAATATTAAAGATGGTGACACGGTTGTTATTTCTGCATCGGCAATACCCGGGAACGAAAAACTGGTTGGACA
GACAATTAACCAGTTATTTAAAAGAGGGGCCAATGTAATTTATGAAGACATTTCAGGAGTTCATGTATCCGGACATGCCA
GTCAAGAAGAATTAAAATTGATGTTAAATCTGGTAAAACCTGAATTCTTTGTTCCTGTTCATGGTGAATTCAGGCATTTA
CACCGACATGCTAAATTAGCAGAAGAAGTTGGCATCCCTGAGAAGAATATCTATATTGCTGATATTGGTGATGTAATTAG
TTTCACCAAACGAAGGGTAAAAAAGGTCGGCGAAATAAGGGCCGGTCAGGTTCTGGTTGACGGCCTTGGTGTTGGTGATG
TTGGCAACATTGTATTAAGGGATAGAAAACTTCTTTCAGAAGATGGTATTATTATTGTAGTTGTGACCATTGATAAGAAA
GGGAAAATATTATCAGGTCCAGATATTATTACCCGGGGATTTGTATATATCCGTGAATCAGAAGAATTAATTGCTGAAGC
AACCTCACGTGTTGAAAAAGCACTGGCTGAGTGTGAAGCGAATAATATTACTGAGTGGTCTGTATTAAAAAGTACCATTA
GGGATGCATTAAATGATTATATTTATAAAAAAATTAAACGTAATCCCATGATTCTCCCTATTATTATGCAGGTATAA

Upstream 100 bases:

>100_bases
TATAATATATATAACGGATATATGAACGGACTTGTTCTTTTTTTTTTGGGAGAATTTATGGGAGAGCGGTTCAATAAGAT
GGAGGTGTTTTTTTTTATTA

Downstream 100 bases:

>100_bases
AAAATTATAAAACAGGTATAAAAAAACATTAAAAAAGGGGTGGGTTTTTGCCACCTCTTTTTTTTAATGTCCAGGAAATT
ATTCACAGGTGTTTTTTATG

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: RNase J2 [H]

Number of amino acids: Translated: 558; Mature: 557

Protein sequence:

>558_residues
MPKKHNINEVKMIPLGGVGEIGKNMMLVEMAGEILIIDAGVMFPEDDLLGIDLVIPDFSYVKENANRVKGIVLTHGHEDH
IGALPYLLKEINVPVFGTKLTLGLVEGKLKEHRINKGRKLKVVNPGSSINVGSFKVDFILVNHSIADTCALAIHTPLGPI
IYASDFKFDQTPIDGEVADFHKLAELGDNYPGVLALFADSTNVEREGYTLSEKVVGGTIDDIFRKARNRIVVATFASNIH
RVQQIVDAAFKYNRKIAFTGRSMINNIEIARELGYLIIPEDMIVDIRNISNLPDDKIVLLTTGSQGEPMAALTRMARGDH
YHINIKDGDTVVISASAIPGNEKLVGQTINQLFKRGANVIYEDISGVHVSGHASQEELKLMLNLVKPEFFVPVHGEFRHL
HRHAKLAEEVGIPEKNIYIADIGDVISFTKRRVKKVGEIRAGQVLVDGLGVGDVGNIVLRDRKLLSEDGIIIVVVTIDKK
GKILSGPDIITRGFVYIRESEELIAEATSRVEKALAECEANNITEWSVLKSTIRDALNDYIYKKIKRNPMILPIIMQV

Sequences:

>Translated_558_residues
MPKKHNINEVKMIPLGGVGEIGKNMMLVEMAGEILIIDAGVMFPEDDLLGIDLVIPDFSYVKENANRVKGIVLTHGHEDH
IGALPYLLKEINVPVFGTKLTLGLVEGKLKEHRINKGRKLKVVNPGSSINVGSFKVDFILVNHSIADTCALAIHTPLGPI
IYASDFKFDQTPIDGEVADFHKLAELGDNYPGVLALFADSTNVEREGYTLSEKVVGGTIDDIFRKARNRIVVATFASNIH
RVQQIVDAAFKYNRKIAFTGRSMINNIEIARELGYLIIPEDMIVDIRNISNLPDDKIVLLTTGSQGEPMAALTRMARGDH
YHINIKDGDTVVISASAIPGNEKLVGQTINQLFKRGANVIYEDISGVHVSGHASQEELKLMLNLVKPEFFVPVHGEFRHL
HRHAKLAEEVGIPEKNIYIADIGDVISFTKRRVKKVGEIRAGQVLVDGLGVGDVGNIVLRDRKLLSEDGIIIVVVTIDKK
GKILSGPDIITRGFVYIRESEELIAEATSRVEKALAECEANNITEWSVLKSTIRDALNDYIYKKIKRNPMILPIIMQV
>Mature_557_residues
PKKHNINEVKMIPLGGVGEIGKNMMLVEMAGEILIIDAGVMFPEDDLLGIDLVIPDFSYVKENANRVKGIVLTHGHEDHI
GALPYLLKEINVPVFGTKLTLGLVEGKLKEHRINKGRKLKVVNPGSSINVGSFKVDFILVNHSIADTCALAIHTPLGPII
YASDFKFDQTPIDGEVADFHKLAELGDNYPGVLALFADSTNVEREGYTLSEKVVGGTIDDIFRKARNRIVVATFASNIHR
VQQIVDAAFKYNRKIAFTGRSMINNIEIARELGYLIIPEDMIVDIRNISNLPDDKIVLLTTGSQGEPMAALTRMARGDHY
HINIKDGDTVVISASAIPGNEKLVGQTINQLFKRGANVIYEDISGVHVSGHASQEELKLMLNLVKPEFFVPVHGEFRHLH
RHAKLAEEVGIPEKNIYIADIGDVISFTKRRVKKVGEIRAGQVLVDGLGVGDVGNIVLRDRKLLSEDGIIIVVVTIDKKG
KILSGPDIITRGFVYIRESEELIAEATSRVEKALAECEANNITEWSVLKSTIRDALNDYIYKKIKRNPMILPIIMQV

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Appears to have a limited effect on 16S rRNA maturation, despite its similarity to rnjA [H]

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61644; Mature: 61512

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKHNINEVKMIPLGGVGEIGKNMMLVEMAGEILIIDAGVMFPEDDLLGIDLVIPDFSY
CCCCCCCCEEEEEECCCCHHHCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCHHH
VKENANRVKGIVLTHGHEDHIGALPYLLKEINVPVFGTKLTLGLVEGKLKEHRINKGRKL
HHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEECEEEEEHHHCHHHHHHCCCCCEE
KVVNPGSSINVGSFKVDFILVNHSIADTCALAIHTPLGPIIYASDFKFDQTPIDGEVADF
EEECCCCCEECCEEEEEEEEEECCCHHHEEEEEECCCCCEEEECCCCCCCCCCCCCHHHH
HKLAELGDNYPGVLALFADSTNVEREGYTLSEKVVGGTIDDIFRKARNRIVVATFASNIH
HHHHHHCCCCCCEEEEEECCCCCCCCCCEEHHHHCCCCHHHHHHHHCCCEEEEEHHHHHH
RVQQIVDAAFKYNRKIAFTGRSMINNIEIARELGYLIIPEDMIVDIRNISNLPDDKIVLL
HHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCEEECHHHEEEHHHCCCCCCCCEEEE
TTGSQGEPMAALTRMARGDHYHINIKDGDTVVISASAIPGNEKLVGQTINQLFKRGANVI
EECCCCCCHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE
YEDISGVHVSGHASQEELKLMLNLVKPEFFVPVHGEFRHLHRHAKLAEEVGIPEKNIYIA
ECCCCCEEEECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEE
DIGDVISFTKRRVKKVGEIRAGQVLVDGLGVGDVGNIVLRDRKLLSEDGIIIVVVTIDKK
EHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCHHHCCCCEEEEEEEECCC
GKILSGPDIITRGFVYIRESEELIAEATSRVEKALAECEANNITEWSVLKSTIRDALNDY
CCEECCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IYKKIKRNPMILPIIMQV
HHHHHCCCCEEEEEEEEC
>Mature Secondary Structure 
PKKHNINEVKMIPLGGVGEIGKNMMLVEMAGEILIIDAGVMFPEDDLLGIDLVIPDFSY
CCCCCCCEEEEEECCCCHHHCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCHHH
VKENANRVKGIVLTHGHEDHIGALPYLLKEINVPVFGTKLTLGLVEGKLKEHRINKGRKL
HHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEECEEEEEHHHCHHHHHHCCCCCEE
KVVNPGSSINVGSFKVDFILVNHSIADTCALAIHTPLGPIIYASDFKFDQTPIDGEVADF
EEECCCCCEECCEEEEEEEEEECCCHHHEEEEEECCCCCEEEECCCCCCCCCCCCCHHHH
HKLAELGDNYPGVLALFADSTNVEREGYTLSEKVVGGTIDDIFRKARNRIVVATFASNIH
HHHHHHCCCCCCEEEEEECCCCCCCCCCEEHHHHCCCCHHHHHHHHCCCEEEEEHHHHHH
RVQQIVDAAFKYNRKIAFTGRSMINNIEIARELGYLIIPEDMIVDIRNISNLPDDKIVLL
HHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCEEECHHHEEEHHHCCCCCCCCEEEE
TTGSQGEPMAALTRMARGDHYHINIKDGDTVVISASAIPGNEKLVGQTINQLFKRGANVI
EECCCCCCHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE
YEDISGVHVSGHASQEELKLMLNLVKPEFFVPVHGEFRHLHRHAKLAEEVGIPEKNIYIA
ECCCCCEEEECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEE
DIGDVISFTKRRVKKVGEIRAGQVLVDGLGVGDVGNIVLRDRKLLSEDGIIIVVVTIDKK
EHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCHHHCCCCEEEEEEEECCC
GKILSGPDIITRGFVYIRESEELIAEATSRVEKALAECEANNITEWSVLKSTIRDALNDY
CCEECCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IYKKIKRNPMILPIIMQV
HHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]