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The map label for this gene is dapB [H]

Identifier: 220931707

GI number: 220931707

Start: 931355

End: 932146

Strand: Direct

Name: dapB [H]

Synonym: Hore_08640

Alternate gene names: 220931707

Gene position: 931355-932146 (Clockwise)

Preceding gene: 220931705

Following gene: 220931708

Centisome position: 36.12

GC content: 37.5

Gene sequence:

>792_bases
GTGAAAAGGGTTTTAGTTAACGGAGCCATGGGCAAGATGGGTCAGGAAGTAGTAAAGACTGTAGTTGAAGAAACTGAAGA
TTTATTGGTCGGTGCCTGTGATATGAAAGGCATTGGAGAAAATATTATGGATCTGTTAGGTTTGAAGGGGGACAGAGTGA
CAATATACGGTGATCTTACAGAAGCGATCCAGAAAACAAATCCAGATGTAATAATAGACTTTACGATACCTGAAGTTGTG
ATGAACAATATAAAGACAGGTCTTTCCCATAAAGTACATATGATTGTAGGCACTACCGGAATTACTGAGGTTGATTTAAA
GGAAATTAAGGACCTGGCTGAAGCAAATAATGTAAATGCATTAATCGTACCCAACTTTGCAATAGGGGCGGTTTTGATGA
TGGAGTTTTCAAGAGAAGCGGCCAGGTATTTTAAGGATGTTGAGATAATTGAATTACATCATAATCAGAAGATTGATGCT
CCTTCAGGTACTTCTATAAAAACTGCTGAATTAATTAATAGAAACATGAATAACTGTGAAAACAATGGAATTAATGAAAT
TGAAAGAATCAAGGGGGCCCGGGGAGGAAATAAAAATGGAGTAAATATTCACAGTGTAAGATTACCCGGCCTTGTGGCCC
ATCAGGAAGTTATCTTCGGTGGAGAAGGCCAGACCTTAACCATAAGACATGATTCATATAGTAGAAAATCATTTATGCCA
GGGGTAAAGCTTGCCCTCAAGAAAATAACTGATATTAATGGTCTGGTATATGGACTTGAAAAAATACTGTAA

Upstream 100 bases:

>100_bases
CAATGGTATAATATTAATAAATATATATTCCTAAATGATGAATATCTATTAGTTTATACTATTTTAAGATTAGTTATGTA
TACAGGAAAGGGTGATTACA

Downstream 100 bases:

>100_bases
TTTAATTATTTTTGATGAAAGGCCGTAACAGGCCTTTTTATTTTTATATCTGCACTTTCCACAGGGTACATACATATATT
AATACTGTATATAATTTTAA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKRVLVNGAMGKMGQEVVKTVVEETEDLLVGACDMKGIGENIMDLLGLKGDRVTIYGDLTEAIQKTNPDVIIDFTIPEVV
MNNIKTGLSHKVHMIVGTTGITEVDLKEIKDLAEANNVNALIVPNFAIGAVLMMEFSREAARYFKDVEIIELHHNQKIDA
PSGTSIKTAELINRNMNNCENNGINEIERIKGARGGNKNGVNIHSVRLPGLVAHQEVIFGGEGQTLTIRHDSYSRKSFMP
GVKLALKKITDINGLVYGLEKIL

Sequences:

>Translated_263_residues
MKRVLVNGAMGKMGQEVVKTVVEETEDLLVGACDMKGIGENIMDLLGLKGDRVTIYGDLTEAIQKTNPDVIIDFTIPEVV
MNNIKTGLSHKVHMIVGTTGITEVDLKEIKDLAEANNVNALIVPNFAIGAVLMMEFSREAARYFKDVEIIELHHNQKIDA
PSGTSIKTAELINRNMNNCENNGINEIERIKGARGGNKNGVNIHSVRLPGLVAHQEVIFGGEGQTLTIRHDSYSRKSFMP
GVKLALKKITDINGLVYGLEKIL
>Mature_263_residues
MKRVLVNGAMGKMGQEVVKTVVEETEDLLVGACDMKGIGENIMDLLGLKGDRVTIYGDLTEAIQKTNPDVIIDFTIPEVV
MNNIKTGLSHKVHMIVGTTGITEVDLKEIKDLAEANNVNALIVPNFAIGAVLMMEFSREAARYFKDVEIIELHHNQKIDA
PSGTSIKTAELINRNMNNCENNGINEIERIKGARGGNKNGVNIHSVRLPGLVAHQEVIFGGEGQTLTIRHDSYSRKSFMP
GVKLALKKITDINGLVYGLEKIL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=257, Percent_Identity=29.9610894941634, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28803; Mature: 28803

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVLVNGAMGKMGQEVVKTVVEETEDLLVGACDMKGIGENIMDLLGLKGDRVTIYGDLT
CCEEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCCEEEEEECHH
EAIQKTNPDVIIDFTIPEVVMNNIKTGLSHKVHMIVGTTGITEVDLKEIKDLAEANNVNA
HHHHHCCCCEEEEECHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCE
LIVPNFAIGAVLMMEFSREAARYFKDVEIIELHHNQKIDAPSGTSIKTAELINRNMNNCE
EEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCC
NNGINEIERIKGARGGNKNGVNIHSVRLPGLVAHQEVIFGGEGQTLTIRHDSYSRKSFMP
CCCHHHHHHHHCCCCCCCCCCEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHCCC
GVKLALKKITDINGLVYGLEKIL
HHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKRVLVNGAMGKMGQEVVKTVVEETEDLLVGACDMKGIGENIMDLLGLKGDRVTIYGDLT
CCEEEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCCEEEEEECHH
EAIQKTNPDVIIDFTIPEVVMNNIKTGLSHKVHMIVGTTGITEVDLKEIKDLAEANNVNA
HHHHHCCCCEEEEECHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCE
LIVPNFAIGAVLMMEFSREAARYFKDVEIIELHHNQKIDAPSGTSIKTAELINRNMNNCE
EEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCC
NNGINEIERIKGARGGNKNGVNIHSVRLPGLVAHQEVIFGGEGQTLTIRHDSYSRKSFMP
CCCHHHHHHHHCCCCCCCCCCEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHCCC
GVKLALKKITDINGLVYGLEKIL
HHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]