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The map label for this gene is ypsC [H]

Identifier: 220931703

GI number: 220931703

Start: 925404

End: 926543

Strand: Direct

Name: ypsC [H]

Synonym: Hore_08600

Alternate gene names: 220931703

Gene position: 925404-926543 (Clockwise)

Preceding gene: 220931702

Following gene: 220931704

Centisome position: 35.89

GC content: 39.21

Gene sequence:

>1140_bases
ATGGAAGAAATTGAATTAATAGCAACATCAACATTTGGTCTGGAGAGTATAGTAAAAAAAGAGGTAAAAGACCTCGGTTA
TCATATTATAAATGTCCAGAATGGTAAAATTGTTTTTAAGGGAGATTTAAAAGCTATATGTCGTGCTAATATCTGGTTGA
GGTGTGCGGAAAGGGTTCAACTAAAGGTGGGCGAGTTTAAGGCGATAACCTTTGATGACTTATATGAAAAAACTTATTCC
TTTCCCTGGGATAAGTGGCTTCCAGAACATGCTGCCTTTCCAGTCAGTGGTAAGTCAGTAAAATCAAAGCTTCACAGTGT
CCCTGCCTGTCAGTCCATTGTTAAAAAAGCTATTGTTGATAAGCTTAAAACCCGATACCATTGTTCCTGGTTTGAGGAAG
ATGGTCCTGTTTTTCCAATACAGGTTGCAATACATAAAGATATAGCTACCCTGACAATTGATACAAGTGGAGATGGCTTA
CATAAAAGGGGGTACCGGGAACTTGTTACCAAAGCTCCCTTACAGGAAACTATAGCTGCAGCAATGATTTATTTGAGTAA
ATGGAATGAAGACCGAATTCTTATAGACCCTTTCTGTGGTTCAGGGACAATCCCCATTGAAACGGCCATGATTGGAAAAA
ATATTGCCCCTGGACTAAACAGGGAATTTGTTTCTGAAAAATGGCCTTGTATAGGACAAAAGTTATGGAAAGAAGCCCGT
GAGGAAGCAAGGGATCTGATTAAAGATGAGTTTAACCCAAGGTTGATTATGGGAACAGATAGAGATGAAAATGTTATCGG
TATAGCAAGACACCATTCCCGGAAGGCCGGTGTTGCTGATTATATACATTTTCAACAGAGGGATTTTTCCGACTTTTCAA
CAAGCAGAAAATACGGTTATATAATTACTAATCCTCCTTATGGAGAGAGACTAAGCGAAAGAAGCTCAGTGGAAAAACTT
TATAGAGAGATGGGACGAAAGCTTAAGCCCCTCGACACCTGGTCATTTTATATTTTGACTTCCCATAGCAGGTTTGAAAA
TTTTTTTGGAAAAAGGGCCAGTAAGAGACGGAAACTATATAATGGTGGTATAGAGTGTCAATATTATCAGTATTACGGTC
CCTGGCCCCCCAGGACATAA

Upstream 100 bases:

>100_bases
TTTAAATAATTGATTTAATAGTATATGAAAGTTATAATAAAAATAATAAACATTAGACTTAAACTATATTTAAATAAAGG
AGTGTAGAGGGAATATTATT

Downstream 100 bases:

>100_bases
TTTCTTATCAAGGGAATGGAGGAATTTAAATGGAGGAGTTTTTACCTGAAAGCTGTCGGGAGCAGGCCTGTATGTTCAGA
AACGAATGGCTTGTTACCAA

Product: putative RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MEEIELIATSTFGLESIVKKEVKDLGYHIINVQNGKIVFKGDLKAICRANIWLRCAERVQLKVGEFKAITFDDLYEKTYS
FPWDKWLPEHAAFPVSGKSVKSKLHSVPACQSIVKKAIVDKLKTRYHCSWFEEDGPVFPIQVAIHKDIATLTIDTSGDGL
HKRGYRELVTKAPLQETIAAAMIYLSKWNEDRILIDPFCGSGTIPIETAMIGKNIAPGLNREFVSEKWPCIGQKLWKEAR
EEARDLIKDEFNPRLIMGTDRDENVIGIARHHSRKAGVADYIHFQQRDFSDFSTSRKYGYIITNPPYGERLSERSSVEKL
YREMGRKLKPLDTWSFYILTSHSRFENFFGKRASKRRKLYNGGIECQYYQYYGPWPPRT

Sequences:

>Translated_379_residues
MEEIELIATSTFGLESIVKKEVKDLGYHIINVQNGKIVFKGDLKAICRANIWLRCAERVQLKVGEFKAITFDDLYEKTYS
FPWDKWLPEHAAFPVSGKSVKSKLHSVPACQSIVKKAIVDKLKTRYHCSWFEEDGPVFPIQVAIHKDIATLTIDTSGDGL
HKRGYRELVTKAPLQETIAAAMIYLSKWNEDRILIDPFCGSGTIPIETAMIGKNIAPGLNREFVSEKWPCIGQKLWKEAR
EEARDLIKDEFNPRLIMGTDRDENVIGIARHHSRKAGVADYIHFQQRDFSDFSTSRKYGYIITNPPYGERLSERSSVEKL
YREMGRKLKPLDTWSFYILTSHSRFENFFGKRASKRRKLYNGGIECQYYQYYGPWPPRT
>Mature_379_residues
MEEIELIATSTFGLESIVKKEVKDLGYHIINVQNGKIVFKGDLKAICRANIWLRCAERVQLKVGEFKAITFDDLYEKTYS
FPWDKWLPEHAAFPVSGKSVKSKLHSVPACQSIVKKAIVDKLKTRYHCSWFEEDGPVFPIQVAIHKDIATLTIDTSGDGL
HKRGYRELVTKAPLQETIAAAMIYLSKWNEDRILIDPFCGSGTIPIETAMIGKNIAPGLNREFVSEKWPCIGQKLWKEAR
EEARDLIKDEFNPRLIMGTDRDENVIGIARHHSRKAGVADYIHFQQRDFSDFSTSRKYGYIITNPPYGERLSERSSVEKL
YREMGRKLKPLDTWSFYILTSHSRFENFFGKRASKRRKLYNGGIECQYYQYYGPWPPRT

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=377, Percent_Identity=32.6259946949602, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43763; Mature: 43763

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEIELIATSTFGLESIVKKEVKDLGYHIINVQNGKIVFKGDLKAICRANIWLRCAERVQ
CCCEEEEEECCCCHHHHHHHHHHHCCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHH
LKVGEFKAITFDDLYEKTYSFPWDKWLPEHAAFPVSGKSVKSKLHSVPACQSIVKKAIVD
EECCCEEEEEHHHHHHHHCCCCHHHCCCHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
KLKTRYHCSWFEEDGPVFPIQVAIHKDIATLTIDTSGDGLHKRGYRELVTKAPLQETIAA
HHHHHHCCEEECCCCCEEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHH
AMIYLSKWNEDRILIDPFCGSGTIPIETAMIGKNIAPGLNREFVSEKWPCIGQKLWKEAR
HHHHHHHCCCCCEEEECCCCCCCCEEEHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHH
EEARDLIKDEFNPRLIMGTDRDENVIGIARHHSRKAGVADYIHFQQRDFSDFSTSRKYGY
HHHHHHHHHCCCCEEEEECCCCCCEEEEEHHCCCCCCHHHHHHHHHCCCCHHCCCCCEEE
IITNPPYGERLSERSSVEKLYREMGRKLKPLDTWSFYILTSHSRFENFFGKRASKRRKLY
EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
NGGIECQYYQYYGPWPPRT
CCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MEEIELIATSTFGLESIVKKEVKDLGYHIINVQNGKIVFKGDLKAICRANIWLRCAERVQ
CCCEEEEEECCCCHHHHHHHHHHHCCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHH
LKVGEFKAITFDDLYEKTYSFPWDKWLPEHAAFPVSGKSVKSKLHSVPACQSIVKKAIVD
EECCCEEEEEHHHHHHHHCCCCHHHCCCHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
KLKTRYHCSWFEEDGPVFPIQVAIHKDIATLTIDTSGDGLHKRGYRELVTKAPLQETIAA
HHHHHHCCEEECCCCCEEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHH
AMIYLSKWNEDRILIDPFCGSGTIPIETAMIGKNIAPGLNREFVSEKWPCIGQKLWKEAR
HHHHHHHCCCCCEEEECCCCCCCCEEEHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHH
EEARDLIKDEFNPRLIMGTDRDENVIGIARHHSRKAGVADYIHFQQRDFSDFSTSRKYGY
HHHHHHHHHCCCCEEEEECCCCCCEEEEEHHCCCCCCHHHHHHHHHCCCCHHCCCCCEEE
IITNPPYGERLSERSSVEKLYREMGRKLKPLDTWSFYILTSHSRFENFFGKRASKRRKLY
EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
NGGIECQYYQYYGPWPPRT
CCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]