| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
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The map label for this gene is tolB [H]
Identifier: 220931667
GI number: 220931667
Start: 888656
End: 891412
Strand: Direct
Name: tolB [H]
Synonym: Hore_08230
Alternate gene names: 220931667
Gene position: 888656-891412 (Clockwise)
Preceding gene: 220931664
Following gene: 220931668
Centisome position: 34.47
GC content: 34.39
Gene sequence:
>2757_bases ATGGATTTGGGTTATAGAAAATGCTTATTTTTTTTAGTTATTTTGTTGATTATGGTAACTTCACCGGTCCTGGCTGGTAA ATGGTATACAATGAAAACTGACCATTTTATAATTAATTTTCAAAAAGATAATGCTATGGCCGCTTATAAAGTTTCCAGAA TTGCTGAAGATGTTCATGATAAATTGATTAGATTTATGGAATATGAACCGGTAACAAAGACATATATAAACATTTTTGAT GATGCCGATATGGCCAATGGTAGTGCTGATGTTATCTGTTTTAACAGAATTAATGTGTATCTTAGAAAGCCAGATATTTA TTCAGGAATGGTAGGTTACAGTGAAAGCTGGTTGCGTCTTGTAATTACACATGAATATACCCATATTCTGCATCTTGATA TGAATGAAGGGGCCTCCAGGTTTTACCGACATATATTGGGGAAAATACCTATATTAACTACTCCCAATATACTTCAACCC TGGTGGCTTATTGAAGGTTATACCACATATACTGAAACAAAATTTACAAACGGGGGGCGGGGTAAAGGTGATATTTATTC AATGTATATAAGGACTGCTGCCCTTCAAGATAAATTATATTCGGTTGACAAAGTAAGCGGGAAATATGACCTTTCTTCCT GGCCTACCGGAGGAATACCGGTTTACATATATGGTTTATCCATTTGCAGGTATATTGCTAAAGAATATGGAGAGGACAAG CTCGTTGAAATAAGCCATAAGTTCTGCGAAGAACCCCAGGAAGGAATTAATAAGGTTATTGAAAAGGTATTGGGAATAGA GGTAGATGAATTATACAAATCATGGAAGTTTGAACAGAAGAGAAAAGCTATAGAATTAAATGAGAGAATTGAAACAGAAG GCAGGACTGAGATAACGAGGTTAACTGAGCATGGTTATTTTACTTTAAATCCTTCGGTTTCACCTGATGGTAAAAAAGTA GCCTATTATCATTATTATAATAAATTTTCGGCGATTAGAATATTAACTGAAGATGGAAGAGATTATCAGCTGGTTCCAGC AATATCATCATCAGATGGAAATATAACATGGTCACCGGATGGAAAAAAACTTGTTTACGCTAAACAGGATGTATATAAAA AAGTATATAATTATTATGATTTATATATGTATGATTTTACCACTGACCGGGAGATAAGGTTGACCCGTGGTGAGAGAGCA TATGCTCCGGTTTTTAAAGATAATAATACAATTATATATTTAACCCAGGATAAAGGTATAACCAGTATTAAAAAAATAGA TTTAAAAACCCGGCAGACTTCAACCATATTAAAGGGAAATAGTAGCTTTTCATTTTCATCTCTTGATATTTCCCCTGATG GAAATAAAGCTGTGTTGAGTGTTATGTATAACAGCAAGAAAGATCTTTATTTATATTCTTTTGAAGATAAGGTATTAAAA CCATTGATAGATGATAACCATATCGAGGTCTTTCCGGTATGGTCACCGGATGGAAAATATGTTGTCTTTAGTTCAGATAG AAATGGTAGATTCAATTTATATGCCCTGGATATGGTTACAAAAAATCTTTATCGCATAACTAATTTATTTACCGGGGCCT TCAAGCCCAGCTTTAGAAATAAAGATGAAATTGTATTTGTCGGATATTCATTAGATGGATATGACCTTTATTCAGTAAGG CTTGACAGGGTGGAATGGAAAAGAGTTGGTAAGTTGAATTTTGTAAATAGAAGACGTATTATAAAGATTAAAGAGGAAGA AGATTCTCCTGATTACTGGTTTGAAAAGCTTAAAACTAGTTATCGGGTCAGGGAATATAGTCCTTTTCCATCATTATATC CCAAATATATAATGCCTAATTTCAGTTTGATATACACTTCTGAGGGAACCAGCCTTGATACAGGTTTTACTACTTATGGT AAGGATGCTCTTGAAAAACATAGCTATTCCATGAGTTTTAACTATCACAATAAATCTCCTGAGCCGTCCTTTGATTTCCA GTATAGTTATCAGCCTGGAACTTTTCTATTATCACTGACCACCAATCAGAGTTTAATAAAAGATGGAGACTGGGTACGGG AGCGTAATGTAGATATTATGCTGGGTTATCCGTTAATAAATAAGTCTTTTTACTACCACCTGTTATTATTAAATTCAGTT TATCATGATGAATATTGTTATGACAATAAAGATGTTGATAGTTATACTCTTTATGGCACAGGTTGGCGATATGGAGGGAT TACCGGTAGTGGTCCAGTCCAGAATAGCCTATACTGGGGTATAGATAGTTACTGGAAAAAAGATAATATAGAAGAATATA AAGTAGAAATGTCTGCAGATAATTATCTGGAATTAAATAAAAAAACTACCCTGGCCGGACGTTTAATTATCGGTTATAAC AAAATTGATGATTTTTCCCTGGGTCAGGGAAACCTGGTAAGAGCCTTCAGGGAAGAACCATTGAAGGGTTCTAAACTGGC AATCTTTAATTTAGAACTGAGAAAGGAATTGATTAACATTGAAAGTGGTCCAGGGGTTTATCCTGTATTCTATGATGACC TCAATGGTACCCTCTTCTATGATTTTGGCTTAACAGGAGATAATGAATATGATGTTATACCTGTTGTTGGAGGAGAACTG GGGCTTGAAATTTCCCAGCTTTATGGATTAATGAATCTGGAACTAGTTCTGGGGTTTGGCCATGACCTGGAATACGAATC CAGCAATTTATATATAAGAATTGGAAAATATTTTTAA
Upstream 100 bases:
>100_bases TGCTGGGGGGAGGAAATTTACTTTTTAAATAGAAGTAAATATTAATATTGTTTATTTTAATTTATATATTACATAAATTA AAATGTTGTAATAGGGAGTG
Downstream 100 bases:
>100_bases CAGGTGGTTTTATTTATGAGAATATTGGTTGATGGTGATTCCTGTCCTGTCATCAAAGAAGTTCAGGAAGTAGCCCGGAA GTTTGGTATTGACCTATTTA
Product: WD40 domain-containing protein beta Propeller
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 918; Mature: 918
Protein sequence:
>918_residues MDLGYRKCLFFLVILLIMVTSPVLAGKWYTMKTDHFIINFQKDNAMAAYKVSRIAEDVHDKLIRFMEYEPVTKTYINIFD DADMANGSADVICFNRINVYLRKPDIYSGMVGYSESWLRLVITHEYTHILHLDMNEGASRFYRHILGKIPILTTPNILQP WWLIEGYTTYTETKFTNGGRGKGDIYSMYIRTAALQDKLYSVDKVSGKYDLSSWPTGGIPVYIYGLSICRYIAKEYGEDK LVEISHKFCEEPQEGINKVIEKVLGIEVDELYKSWKFEQKRKAIELNERIETEGRTEITRLTEHGYFTLNPSVSPDGKKV AYYHYYNKFSAIRILTEDGRDYQLVPAISSSDGNITWSPDGKKLVYAKQDVYKKVYNYYDLYMYDFTTDREIRLTRGERA YAPVFKDNNTIIYLTQDKGITSIKKIDLKTRQTSTILKGNSSFSFSSLDISPDGNKAVLSVMYNSKKDLYLYSFEDKVLK PLIDDNHIEVFPVWSPDGKYVVFSSDRNGRFNLYALDMVTKNLYRITNLFTGAFKPSFRNKDEIVFVGYSLDGYDLYSVR LDRVEWKRVGKLNFVNRRRIIKIKEEEDSPDYWFEKLKTSYRVREYSPFPSLYPKYIMPNFSLIYTSEGTSLDTGFTTYG KDALEKHSYSMSFNYHNKSPEPSFDFQYSYQPGTFLLSLTTNQSLIKDGDWVRERNVDIMLGYPLINKSFYYHLLLLNSV YHDEYCYDNKDVDSYTLYGTGWRYGGITGSGPVQNSLYWGIDSYWKKDNIEEYKVEMSADNYLELNKKTTLAGRLIIGYN KIDDFSLGQGNLVRAFREEPLKGSKLAIFNLELRKELINIESGPGVYPVFYDDLNGTLFYDFGLTGDNEYDVIPVVGGEL GLEISQLYGLMNLELVLGFGHDLEYESSNLYIRIGKYF
Sequences:
>Translated_918_residues MDLGYRKCLFFLVILLIMVTSPVLAGKWYTMKTDHFIINFQKDNAMAAYKVSRIAEDVHDKLIRFMEYEPVTKTYINIFD DADMANGSADVICFNRINVYLRKPDIYSGMVGYSESWLRLVITHEYTHILHLDMNEGASRFYRHILGKIPILTTPNILQP WWLIEGYTTYTETKFTNGGRGKGDIYSMYIRTAALQDKLYSVDKVSGKYDLSSWPTGGIPVYIYGLSICRYIAKEYGEDK LVEISHKFCEEPQEGINKVIEKVLGIEVDELYKSWKFEQKRKAIELNERIETEGRTEITRLTEHGYFTLNPSVSPDGKKV AYYHYYNKFSAIRILTEDGRDYQLVPAISSSDGNITWSPDGKKLVYAKQDVYKKVYNYYDLYMYDFTTDREIRLTRGERA YAPVFKDNNTIIYLTQDKGITSIKKIDLKTRQTSTILKGNSSFSFSSLDISPDGNKAVLSVMYNSKKDLYLYSFEDKVLK PLIDDNHIEVFPVWSPDGKYVVFSSDRNGRFNLYALDMVTKNLYRITNLFTGAFKPSFRNKDEIVFVGYSLDGYDLYSVR LDRVEWKRVGKLNFVNRRRIIKIKEEEDSPDYWFEKLKTSYRVREYSPFPSLYPKYIMPNFSLIYTSEGTSLDTGFTTYG KDALEKHSYSMSFNYHNKSPEPSFDFQYSYQPGTFLLSLTTNQSLIKDGDWVRERNVDIMLGYPLINKSFYYHLLLLNSV YHDEYCYDNKDVDSYTLYGTGWRYGGITGSGPVQNSLYWGIDSYWKKDNIEEYKVEMSADNYLELNKKTTLAGRLIIGYN KIDDFSLGQGNLVRAFREEPLKGSKLAIFNLELRKELINIESGPGVYPVFYDDLNGTLFYDFGLTGDNEYDVIPVVGGEL GLEISQLYGLMNLELVLGFGHDLEYESSNLYIRIGKYF >Mature_918_residues MDLGYRKCLFFLVILLIMVTSPVLAGKWYTMKTDHFIINFQKDNAMAAYKVSRIAEDVHDKLIRFMEYEPVTKTYINIFD DADMANGSADVICFNRINVYLRKPDIYSGMVGYSESWLRLVITHEYTHILHLDMNEGASRFYRHILGKIPILTTPNILQP WWLIEGYTTYTETKFTNGGRGKGDIYSMYIRTAALQDKLYSVDKVSGKYDLSSWPTGGIPVYIYGLSICRYIAKEYGEDK LVEISHKFCEEPQEGINKVIEKVLGIEVDELYKSWKFEQKRKAIELNERIETEGRTEITRLTEHGYFTLNPSVSPDGKKV AYYHYYNKFSAIRILTEDGRDYQLVPAISSSDGNITWSPDGKKLVYAKQDVYKKVYNYYDLYMYDFTTDREIRLTRGERA YAPVFKDNNTIIYLTQDKGITSIKKIDLKTRQTSTILKGNSSFSFSSLDISPDGNKAVLSVMYNSKKDLYLYSFEDKVLK PLIDDNHIEVFPVWSPDGKYVVFSSDRNGRFNLYALDMVTKNLYRITNLFTGAFKPSFRNKDEIVFVGYSLDGYDLYSVR LDRVEWKRVGKLNFVNRRRIIKIKEEEDSPDYWFEKLKTSYRVREYSPFPSLYPKYIMPNFSLIYTSEGTSLDTGFTTYG KDALEKHSYSMSFNYHNKSPEPSFDFQYSYQPGTFLLSLTTNQSLIKDGDWVRERNVDIMLGYPLINKSFYYHLLLLNSV YHDEYCYDNKDVDSYTLYGTGWRYGGITGSGPVQNSLYWGIDSYWKKDNIEEYKVEMSADNYLELNKKTTLAGRLIIGYN KIDDFSLGQGNLVRAFREEPLKGSKLAIFNLELRKELINIESGPGVYPVFYDDLNGTLFYDFGLTGDNEYDVIPVVGGEL GLEISQLYGLMNLELVLGFGHDLEYESSNLYIRIGKYF
Specific function: Involved in the tonB-independent uptake of proteins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tolB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011659 - InterPro: IPR014167 - InterPro: IPR007195 - InterPro: IPR015943 [H]
Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]
EC number: NA
Molecular weight: Translated: 106630; Mature: 106630
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLGYRKCLFFLVILLIMVTSPVLAGKWYTMKTDHFIINFQKDNAMAAYKVSRIAEDVHD CCCCHHHHHHHHHHHHHHHCCCHHCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHH KLIRFMEYEPVTKTYINIFDDADMANGSADVICFNRINVYLRKPDIYSGMVGYSESWLRL HHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEE VITHEYTHILHLDMNEGASRFYRHILGKIPILTTPNILQPWWLIEGYTTYTETKFTNGGR EEEECEEEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCEEEEECEEEEEEEEECCCCC GKGDIYSMYIRTAALQDKLYSVDKVSGKYDLSSWPTGGIPVYIYGLSICRYIAKEYGEDK CCCCEEEEEHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHCCCC LVEISHKFCEEPQEGINKVIEKVLGIEVDELYKSWKFEQKRKAIELNERIETEGRTEITR EEHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHEEHHHHHCCCCCCEEEE LTEHGYFTLNPSVSPDGKKVAYYHYYNKFSAIRILTEDGRDYQLVPAISSSDGNITWSPD EECCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEECCCCCEEEEEEEECCCCEEEECCC GKKLVYAKQDVYKKVYNYYDLYMYDFTTDREIRLTRGERAYAPVFKDNNTIIYLTQDKGI CCEEEEEHHHHHHHHHCEEEEEEEEECCCCEEEEECCCCEECCEEECCCEEEEEECCCCC TSIKKIDLKTRQTSTILKGNSSFSFSSLDISPDGNKAVLSVMYNSKKDLYLYSFEDKVLK CEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCHHHH PLIDDNHIEVFPVWSPDGKYVVFSSDRNGRFNLYALDMVTKNLYRITNLFTGAFKPSFRN HHCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC KDEIVFVGYSLDGYDLYSVRLDRVEWKRVGKLNFVNRRRIIKIKEEEDSPDYWFEKLKTS CCCEEEEEEECCCEEEEEEEECCCHHHHCCCEEEECCEEEEEEECCCCCHHHHHHHHHHH YRVREYSPFPSLYPKYIMPNFSLIYTSEGTSLDTGFTTYGKDALEKHSYSMSFNYHNKSP EEEEECCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCEEEEEEECCCCC EPSFDFQYSYQPGTFLLSLTTNQSLIKDGDWVRERNVDIMLGYPLINKSFYYHLLLLNSV CCCCCEEEEECCCEEEEEEECCCCHHCCCCCHHHCCCEEEECCCCCCCCCEEEEEEHHHH YHDEYCYDNKDVDSYTLYGTGWRYGGITGSGPVQNSLYWGIDSYWKKDNIEEYKVEMSAD HCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCEEECCHHHHCCCCCEEEEEEECCC NYLELNKKTTLAGRLIIGYNKIDDFSLGQGNLVRAFREEPLKGSKLAIFNLELRKELINI CEEEECCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHCC ESGPGVYPVFYDDLNGTLFYDFGLTGDNEYDVIPVVGGELGLEISQLYGLMNLELVLGFG CCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHCCEEEEEEEECC HDLEYESSNLYIRIGKYF CCCCCCCCCEEEEEECCC >Mature Secondary Structure MDLGYRKCLFFLVILLIMVTSPVLAGKWYTMKTDHFIINFQKDNAMAAYKVSRIAEDVHD CCCCHHHHHHHHHHHHHHHCCCHHCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHH KLIRFMEYEPVTKTYINIFDDADMANGSADVICFNRINVYLRKPDIYSGMVGYSESWLRL HHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEE VITHEYTHILHLDMNEGASRFYRHILGKIPILTTPNILQPWWLIEGYTTYTETKFTNGGR EEEECEEEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCEEEEECEEEEEEEEECCCCC GKGDIYSMYIRTAALQDKLYSVDKVSGKYDLSSWPTGGIPVYIYGLSICRYIAKEYGEDK CCCCEEEEEHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHCCCC LVEISHKFCEEPQEGINKVIEKVLGIEVDELYKSWKFEQKRKAIELNERIETEGRTEITR EEHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHEEHHHHHCCCCCCEEEE LTEHGYFTLNPSVSPDGKKVAYYHYYNKFSAIRILTEDGRDYQLVPAISSSDGNITWSPD EECCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEECCCCCEEEEEEEECCCCEEEECCC GKKLVYAKQDVYKKVYNYYDLYMYDFTTDREIRLTRGERAYAPVFKDNNTIIYLTQDKGI CCEEEEEHHHHHHHHHCEEEEEEEEECCCCEEEEECCCCEECCEEECCCEEEEEECCCCC TSIKKIDLKTRQTSTILKGNSSFSFSSLDISPDGNKAVLSVMYNSKKDLYLYSFEDKVLK CEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCHHHH PLIDDNHIEVFPVWSPDGKYVVFSSDRNGRFNLYALDMVTKNLYRITNLFTGAFKPSFRN HHCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC KDEIVFVGYSLDGYDLYSVRLDRVEWKRVGKLNFVNRRRIIKIKEEEDSPDYWFEKLKTS CCCEEEEEEECCCEEEEEEEECCCHHHHCCCEEEECCEEEEEEECCCCCHHHHHHHHHHH YRVREYSPFPSLYPKYIMPNFSLIYTSEGTSLDTGFTTYGKDALEKHSYSMSFNYHNKSP EEEEECCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCEEEEEEECCCCC EPSFDFQYSYQPGTFLLSLTTNQSLIKDGDWVRERNVDIMLGYPLINKSFYYHLLLLNSV CCCCCEEEEECCCEEEEEEECCCCHHCCCCCHHHCCCEEEECCCCCCCCCEEEEEEHHHH YHDEYCYDNKDVDSYTLYGTGWRYGGITGSGPVQNSLYWGIDSYWKKDNIEEYKVEMSAD HCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCEEECCHHHHCCCCCEEEEEEECCC NYLELNKKTTLAGRLIIGYNKIDDFSLGQGNLVRAFREEPLKGSKLAIFNLELRKELINI CEEEECCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHCC ESGPGVYPVFYDDLNGTLFYDFGLTGDNEYDVIPVVGGELGLEISQLYGLMNLELVLGFG CCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHCCEEEEEEEECC HDLEYESSNLYIRIGKYF CCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA