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The map label for this gene is rbfA

Identifier: 220931629

GI number: 220931629

Start: 844291

End: 844659

Strand: Direct

Name: rbfA

Synonym: Hore_07850

Alternate gene names: 220931629

Gene position: 844291-844659 (Clockwise)

Preceding gene: 220931628

Following gene: 220931630

Centisome position: 32.75

GC content: 36.59

Gene sequence:

>369_bases
ATGAAGAGGCAACGAGCCCGAAGACTTGGTGAACTTTTAAAAAAAGAAATTAGCGATATTATACTGAGAGAAGTTAAAGA
CCCGCGAATTGGGTTTATTTCTGTAACTGATGTAGAGGTTTCAAATGATTTGCGCCATGCCAAGGTTTTTGTTAGTGTAT
ATGGTGATGAAAAAGAACGTAAAGAGACCATGGAGGGTTTAGAAAAGGCTACCGGTTATATAAGAAAATTGATTGGAGAA
AGAGTAAAGGTTTATTATACACCTGAAATACTTTTCAGGTATGATGATTCACTTGAACATGGTGCCCGTATCAATGAACT
TTTAAAAAAGGTTAAGGAGGAAGAAGAATCGGATAGGGAAGAGGGTTAA

Upstream 100 bases:

>100_bases
GGAATTGAAGGTTATAATGATATTAAAGAAGGGGACCAGATTGAAACCTATACCTATAGGGAAATAAAACGCACCTTATA
GGTTTTAAGAGGTGAGATAA

Downstream 100 bases:

>100_bases
CAATGATAAAATTAACCACAGTAATTGAAGCGATAAAAAAGAGTGATAATTACCTTATTGTTGGCCATGTTGACCCAGAT
GGGGATTGTATTGGCTCCAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKRQRARRLGELLKKEISDIILREVKDPRIGFISVTDVEVSNDLRHAKVFVSVYGDEKERKETMEGLEKATGYIRKLIGE
RVKVYYTPEILFRYDDSLEHGARINELLKKVKEEEESDREEG

Sequences:

>Translated_122_residues
MKRQRARRLGELLKKEISDIILREVKDPRIGFISVTDVEVSNDLRHAKVFVSVYGDEKERKETMEGLEKATGYIRKLIGE
RVKVYYTPEILFRYDDSLEHGARINELLKKVKEEEESDREEG
>Mature_122_residues
MKRQRARRLGELLKKEISDIILREVKDPRIGFISVTDVEVSNDLRHAKVFVSVYGDEKERKETMEGLEKATGYIRKLIGE
RVKVYYTPEILFRYDDSLEHGARINELLKKVKEEEESDREEG

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=118, Percent_Identity=38.9830508474576, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_HALOH (B8CW73)

Other databases:

- EMBL:   CP001098
- RefSeq:   YP_002508537.1
- ProteinModelPortal:   B8CW73
- GeneID:   7314772
- GenomeReviews:   CP001098_GR
- KEGG:   hor:Hore_07850
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14356; Mature: 14356

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRQRARRLGELLKKEISDIILREVKDPRIGFISVTDVEVSNDLRHAKVFVSVYGDEKER
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCHHHH
KETMEGLEKATGYIRKLIGERVKVYYTPEILFRYDDSLEHGARINELLKKVKEEEESDRE
HHHHHHHHHHHHHHHHHHHCCEEEEECHHHEEEECCCHHCCHHHHHHHHHHHHHHHHCCC
EG
CC
>Mature Secondary Structure
MKRQRARRLGELLKKEISDIILREVKDPRIGFISVTDVEVSNDLRHAKVFVSVYGDEKER
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCHHHH
KETMEGLEKATGYIRKLIGERVKVYYTPEILFRYDDSLEHGARINELLKKVKEEEESDRE
HHHHHHHHHHHHHHHHHHHCCEEEEECHHHEEEECCCHHCCHHHHHHHHHHHHHHHHCCC
EG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA