Click here to switch to the map view.

The map label for this gene is yraN [C]

Identifier: 220931584

GI number: 220931584

Start: 797063

End: 797413

Strand: Direct

Name: yraN [C]

Synonym: Hore_07400

Alternate gene names: 220931584

Gene position: 797063-797413 (Clockwise)

Preceding gene: 220931583

Following gene: 220931585

Centisome position: 30.92

GC content: 31.91

Gene sequence:

>351_bases
TTGCAAAACAGGGAACTTGGGGACTGGGGAGAAAAGAAAGCAGTAAGGTATCTAAAATCTAAAGGTTATCAAGTTATTAA
AACAAATTACCGTTGCCTGATCGGAGAAATAGATATTATTGCTATTGATAATAATTTTCTCGTTTTTGTAGAGGTCAAGA
CAAGGCGAAGTATTGCATACGGTGTTCCAGCCTGTGCAGTTAATTTTGATAAGCAGAAAAAAATAAGAAAGGTAGCCAGG
CATTATTTAAAAAGTAATATGATAAATAAGTACCAGATAAGGTTTGATGTTATATCTATTATTGTTAAAAATAACAGGGG
TTTTTTAAAACATATTAAAAACGCCTTCTAG

Upstream 100 bases:

>100_bases
TTTAAAGGTAAAAATAAGTAAAATTTATAAGAAGAAATGCAGGAATAGGCCAACTAATGGCGAATATAGAAGTAAATGGA
AAGAATGTGGGGTAAATATT

Downstream 100 bases:

>100_bases
TTTATTTTCTTAAAAAGGAGAAAGGGATAGGTAGAAGGGAGAAGTTAATGTTAGCTAAAGTTATAAGTGCTTCACTTAAA
GGTATTAACGGAGTAAAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MQNRELGDWGEKKAVRYLKSKGYQVIKTNYRCLIGEIDIIAIDNNFLVFVEVKTRRSIAYGVPACAVNFDKQKKIRKVAR
HYLKSNMINKYQIRFDVISIIVKNNRGFLKHIKNAF

Sequences:

>Translated_116_residues
MQNRELGDWGEKKAVRYLKSKGYQVIKTNYRCLIGEIDIIAIDNNFLVFVEVKTRRSIAYGVPACAVNFDKQKKIRKVAR
HYLKSNMINKYQIRFDVISIIVKNNRGFLKHIKNAF
>Mature_116_residues
MQNRELGDWGEKKAVRYLKSKGYQVIKTNYRCLIGEIDIIAIDNNFLVFVEVKTRRSIAYGVPACAVNFDKQKKIRKVAR
HYLKSNMINKYQIRFDVISIIVKNNRGFLKHIKNAF

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family [H]

Homologues:

Organism=Escherichia coli, GI1789538, Length=118, Percent_Identity=33.8983050847458, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509 [H]

Pfam domain/function: PF02021 UPF0102 [H]

EC number: NA

Molecular weight: Translated: 13625; Mature: 13625

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNRELGDWGEKKAVRYLKSKGYQVIKTNYRCLIGEIDIIAIDNNFLVFVEVKTRRSIAY
CCCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEEECEEEEEECCCEEEEEEEECCCEEEC
GVPACAVNFDKQKKIRKVARHYLKSNMINKYQIRFDVISIIVKNNRGFLKHIKNAF
CCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEHHEEEEEEEEECCCHHHHHHHHCC
>Mature Secondary Structure
MQNRELGDWGEKKAVRYLKSKGYQVIKTNYRCLIGEIDIIAIDNNFLVFVEVKTRRSIAY
CCCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEEECEEEEEECCCEEEEEEEECCCEEEC
GVPACAVNFDKQKKIRKVARHYLKSNMINKYQIRFDVISIIVKNNRGFLKHIKNAF
CCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEHHEEEEEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA