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The map label for this gene is nodB [H]

Identifier: 220931488

GI number: 220931488

Start: 698694

End: 699911

Strand: Reverse

Name: nodB [H]

Synonym: Hore_06440

Alternate gene names: 220931488

Gene position: 699911-698694 (Counterclockwise)

Preceding gene: 220931534

Following gene: 220931483

Centisome position: 27.15

GC content: 36.45

Gene sequence:

>1218_bases
ATGAAAAAATTTTACTATCATTATTTGAAATCTTTATCAATGTACTTATCCCTTATTATTATATTAACACTTTTTATGCC
TCTCAATATTGAAGCTGCTAAAGTACACCGGGTAAAACCCGGGGAAAATCTTTATAGTATAGCCAGAAAATATGGTGTAA
CCGTTAATGAAATTATCAGAACAAACAATTTACGTAATCCCGGTCAATTTTTTTCAACCCAGGCATTAATTATCCCTGAT
GCTTACCGCCCCAATATTTATCGTGTCCAGAAAGGAGATACTCTTTATCTAATCTCTAAAAAGCTGGAAATACCAATGGA
TTTTTTAGCAAAAGTAAATTACCTGACCGATAAAGATGAACTATATGAACGCCAGGTTCTCTATGTTCCTGCCTGGCCCA
GGTTTCATAAAGTTAAACCCGGTGACACCCTTTATAAAATATCAAAAAGATATGGAATTTCTTTAAAGAGAATTAAAGAA
GCAAACCAGTTATACAGTCATAATAACCTGAAAATAGGTCAGTATATCAAAGTACCGGCTCCGGAGTATAAACCACCTGA
AAGAAAAGACCCCCAGTATACAAAGTTATTTCCTGATACCTTTTTCTTATCAGGTAAAACCAACGGATATAATATAGCCT
TAACCTTTGATGACGGTCCTGATAACATTTATACCCCTAAAATCCTTGATATACTAAAAAAATATAATGTAAGAGCCACC
TTCTTTTTAATGGGTAGCAGGGCTGACAGATACCCTGATATTGTAAAACGAATGGTCAGGGAAGGCCATATAGTAGCTAA
CCACACCTGGTCCCATGTAAACCTGAACAAAACAACATCGTCACGTTTCTATAATGAAATTACAAATACCAGTAATACAA
TAAAAAATCATACCAGTCTTACACCGGCTTTAGTACGGCCACCTTATGGAGCAGTGTCTACCAGTGTAATTAAGCGACTT
AAAAATATGGGTTTTAAGGTTATATTCTGGTCAGTAGATTCCAGGGACTGGAATACCCAGGATGTTGATAAAATTTTAAT
TAATACCCTGCCAAATGTCAGAAAGGACTCCATAATTCTCTTTCATTCAGCCGGTGGTGAAGGCCACGATCTCTCGGCAA
CTGTCAGGGCTTTACCGGAGTTAATTAATACCTTAAGAATGCTTGACTATCGCTTTGTAAACCTGACCCAGCTTCTTGGC
ATTAAGGCATACCAGTAA

Upstream 100 bases:

>100_bases
CTTTACCATAATTTACATGTAGGTATTATCATTATTTTATTGTATTAGTATATATTAGATGTTCTATTTATATATTCCAT
TACAGGAGGTATTTTCTTTT

Downstream 100 bases:

>100_bases
TAAATGAAACATGAAGGAATCATGCACGCCGAACAGTTCCTGTGTTCATCAAACTATACCAGTAATTAATTGAAATCTAA
CCTGGAAAGGCTGTTAACTA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKKFYYHYLKSLSMYLSLIIILTLFMPLNIEAAKVHRVKPGENLYSIARKYGVTVNEIIRTNNLRNPGQFFSTQALIIPD
AYRPNIYRVQKGDTLYLISKKLEIPMDFLAKVNYLTDKDELYERQVLYVPAWPRFHKVKPGDTLYKISKRYGISLKRIKE
ANQLYSHNNLKIGQYIKVPAPEYKPPERKDPQYTKLFPDTFFLSGKTNGYNIALTFDDGPDNIYTPKILDILKKYNVRAT
FFLMGSRADRYPDIVKRMVREGHIVANHTWSHVNLNKTTSSRFYNEITNTSNTIKNHTSLTPALVRPPYGAVSTSVIKRL
KNMGFKVIFWSVDSRDWNTQDVDKILINTLPNVRKDSIILFHSAGGEGHDLSATVRALPELINTLRMLDYRFVNLTQLLG
IKAYQ

Sequences:

>Translated_405_residues
MKKFYYHYLKSLSMYLSLIIILTLFMPLNIEAAKVHRVKPGENLYSIARKYGVTVNEIIRTNNLRNPGQFFSTQALIIPD
AYRPNIYRVQKGDTLYLISKKLEIPMDFLAKVNYLTDKDELYERQVLYVPAWPRFHKVKPGDTLYKISKRYGISLKRIKE
ANQLYSHNNLKIGQYIKVPAPEYKPPERKDPQYTKLFPDTFFLSGKTNGYNIALTFDDGPDNIYTPKILDILKKYNVRAT
FFLMGSRADRYPDIVKRMVREGHIVANHTWSHVNLNKTTSSRFYNEITNTSNTIKNHTSLTPALVRPPYGAVSTSVIKRL
KNMGFKVIFWSVDSRDWNTQDVDKILINTLPNVRKDSIILFHSAGGEGHDLSATVRALPELINTLRMLDYRFVNLTQLLG
IKAYQ
>Mature_405_residues
MKKFYYHYLKSLSMYLSLIIILTLFMPLNIEAAKVHRVKPGENLYSIARKYGVTVNEIIRTNNLRNPGQFFSTQALIIPD
AYRPNIYRVQKGDTLYLISKKLEIPMDFLAKVNYLTDKDELYERQVLYVPAWPRFHKVKPGDTLYKISKRYGISLKRIKE
ANQLYSHNNLKIGQYIKVPAPEYKPPERKDPQYTKLFPDTFFLSGKTNGYNIALTFDDGPDNIYTPKILDILKKYNVRAT
FFLMGSRADRYPDIVKRMVREGHIVANHTWSHVNLNKTTSSRFYNEITNTSNTIKNHTSLTPALVRPPYGAVSTSVIKRL
KNMGFKVIFWSVDSRDWNTQDVDKILINTLPNVRKDSIILFHSAGGEGHDLSATVRALPELINTLRMLDYRFVNLTQLLG
IKAYQ

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=167, Percent_Identity=31.7365269461078, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6323339, Length=130, Percent_Identity=36.9230769230769, Blast_Score=90, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 46945; Mature: 46945

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFYYHYLKSLSMYLSLIIILTLFMPLNIEAAKVHRVKPGENLYSIARKYGVTVNEIIR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHCCCHHHHHH
TNNLRNPGQFFSTQALIIPDAYRPNIYRVQKGDTLYLISKKLEIPMDFLAKVNYLTDKDE
HCCCCCCCHHHCCEEEEECCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCHHH
LYERQVLYVPAWPRFHKVKPGDTLYKISKRYGISLKRIKEANQLYSHNNLKIGQYIKVPA
HHCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCEEECCC
PEYKPPERKDPQYTKLFPDTFFLSGKTNGYNIALTFDDGPDNIYTPKILDILKKYNVRAT
CCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCEEE
FFLMGSRADRYPDIVKRMVREGHIVANHTWSHVNLNKTTSSRFYNEITNTSNTIKNHTSL
EEEECCCCCCCHHHHHHHHHCCCEEEECCEEEEEECCCHHHHHHHHHHCCCHHHCCCCCC
TPALVRPPYGAVSTSVIKRLKNMGFKVIFWSVDSRDWNTQDVDKILINTLPNVRKDSIIL
CCHHCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEE
FHSAGGEGHDLSATVRALPELINTLRMLDYRFVNLTQLLGIKAYQ
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKFYYHYLKSLSMYLSLIIILTLFMPLNIEAAKVHRVKPGENLYSIARKYGVTVNEIIR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHCCCHHHHHH
TNNLRNPGQFFSTQALIIPDAYRPNIYRVQKGDTLYLISKKLEIPMDFLAKVNYLTDKDE
HCCCCCCCHHHCCEEEEECCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCHHH
LYERQVLYVPAWPRFHKVKPGDTLYKISKRYGISLKRIKEANQLYSHNNLKIGQYIKVPA
HHCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCEEECCC
PEYKPPERKDPQYTKLFPDTFFLSGKTNGYNIALTFDDGPDNIYTPKILDILKKYNVRAT
CCCCCCCCCCCCCEEECCCEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCEEE
FFLMGSRADRYPDIVKRMVREGHIVANHTWSHVNLNKTTSSRFYNEITNTSNTIKNHTSL
EEEECCCCCCCHHHHHHHHHCCCEEEECCEEEEEECCCHHHHHHHHHHCCCHHHCCCCCC
TPALVRPPYGAVSTSVIKRLKNMGFKVIFWSVDSRDWNTQDVDKILINTLPNVRKDSIIL
CCHHCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEE
FHSAGGEGHDLSATVRALPELINTLRMLDYRFVNLTQLLGIKAYQ
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7949325 [H]