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The map label for this gene is yqgF [C]

Identifier: 220931424

GI number: 220931424

Start: 636448

End: 636870

Strand: Direct

Name: yqgF [C]

Synonym: Hore_05800

Alternate gene names: 220931424

Gene position: 636448-636870 (Clockwise)

Preceding gene: 220931423

Following gene: 220931425

Centisome position: 24.69

GC content: 38.3

Gene sequence:

>423_bases
ATGAGAATTATGGGGCTGGATTATGGTGATAGGCGTATTGGGGTTGCTATCAGTGATAAACTGGGAATGACTGCCCAGGG
GCAGGAAGTTATAATAAGAAAAACCCCTGAAGAAGACCTGGAAGTGATAAAGGGCCTGATAGATAAATATGAGGTTGAAG
AAATAATTGTTGGTATGCCTAAAAACATGGATGGGAGTCTTGGACCCAGGGCTGAAAAAACCAGGGATTTTATTGATTTT
TTACAAAAAAGCCTGGATACTCCCGTTAAAGTATGGGATGAAAGATTATCTACTGTTGAGGCTGAAAGGGTTTTAATTGA
AGCAGATGTGAGCCGGAAAAAAAGGAAAGGTGTTATTGATAAAGTTGCTGCTTCAATAATATTGCAGGGTTATTTAAATT
ACCAAAATAAACTACATGGTTAG

Upstream 100 bases:

>100_bases
GGGCAATATTTTACCAAAACTGGGCTTTGCTATTAAAGTTGTTGTTAAAGAACCGGATTTTGAAGTAATGCCAGTAAGTA
ATTGAAAGTGAGGGCTTTAT

Downstream 100 bases:

>100_bases
GGGGAATTATAATGGCTGAAGGTAGATTTTATGTTGATGAGGAGACAAAAACACTGGTCCTGGAAGGTGAAGATAGTGAG
GACAGATTTTATATTGAGGA

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MRIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPKNMDGSLGPRAEKTRDFIDF
LQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVIDKVAASIILQGYLNYQNKLHG

Sequences:

>Translated_140_residues
MRIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPKNMDGSLGPRAEKTRDFIDF
LQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVIDKVAASIILQGYLNYQNKLHG
>Mature_140_residues
MRIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPKNMDGSLGPRAEKTRDFIDF
LQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVIDKVAASIILQGYLNYQNKLHG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=130, Percent_Identity=36.1538461538462, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_HALOH (B8D2B0)

Other databases:

- EMBL:   CP001098
- RefSeq:   YP_002508332.1
- ProteinModelPortal:   B8D2B0
- SMR:   B8D2B0
- GeneID:   7313552
- GenomeReviews:   CP001098_GR
- KEGG:   hor:Hore_05800
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15817; Mature: 15817

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMP
CEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
KNMDGSLGPRAEKTRDFIDFLQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVID
CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
KVAASIILQGYLNYQNKLHG
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIMGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMP
CEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
KNMDGSLGPRAEKTRDFIDFLQKSLDTPVKVWDERLSTVEAERVLIEADVSRKKRKGVID
CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
KVAASIILQGYLNYQNKLHG
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA