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The map label for this gene is citF [H]

Identifier: 220931314

GI number: 220931314

Start: 501955

End: 503448

Strand: Direct

Name: citF [H]

Synonym: Hore_04690

Alternate gene names: 220931314

Gene position: 501955-503448 (Clockwise)

Preceding gene: 220931313

Following gene: 220931315

Centisome position: 19.47

GC content: 37.75

Gene sequence:

>1494_bases
TTGAGGGAGAATACAATTCCTGAAAGGGTAGGTTCATTTAAAAATCTTCGTTCCTATAGTTATATAAAGCCAGAAAGGAA
AAGTAAAATTATTGGTAGTTTAGAGGAAGCAGTAAATAAGGTTAACCTCAGGGATGGTATGACAGTTTCTTTTCACCATC
ATTTTCGTGACGGGGATCTAATATTAAATCAGGTTATGGATATTATTGCAGACAAAGGTGTGAAAAATCTTACCCTGGCT
GCTACTTCTCTGAGAAAAAACCACGATGAAATAATTAAACACATTAAAAGTGGAGTTATTAAAAAGATATATACTTCTGG
TCTAAGGGGGAAATTGGGTGAAGAAATTTGCCGGGGACTTATGGATGAACCTGTTGTTATTTATTCTCATGGTGGTAGGG
CGGGTGCTATAGAGAGTGGTAATTTAAAGATTGATGTTGCCTTTATTGCTACTCCTGCAGCAGACAGGTGGGGTAATGCA
AATGGAGTGGAAGGCACCTCTAACTGTGGCTCCCTTGGTTATACCATGGTTGATGCTAAGTATGCTGAAAAAGTTGTAGT
AATAACTGATAATTTAATTGAGTTTCCACCAGAACATATTTCAATATCACAAGAGAATGTTGACTGCGTGGTTGAGGTTG
ATAAAGTAGGAAATAGTGATAGAATTGAAACAGGTTCTCTAAGAAAGGTTTCCAGGCCTAAGGATTTGTATATTGCCAAA
AACGTTGCCAGGGTAATAAGTAATATCAAGTATTTTCAGAATGGATTTTCGCTCCAGACAGGGTCAGGGGGGATCTCCCT
GGCAGTTACTGATTTTATACAGGAGTTAATGCAGGAAAGAGACATTAAAGGTAGCTTTATCCTGGGGGGGATTACCGGGG
CACACACAGATTTACTAAAGAAAGGTTTATTTAAAAAAATATTTGATACCCAGACCTTTGATCTACAGGCAGTAAAATCA
CTTAGAGAAAACAGAAACCATATGGAAATAGATGCATCATTATACGCTAGCGCTTTTAATAAAGGTTCACTGGTTAATAA
TCTCGATTTTGTTGTGCTCAGTGCCCTTGAGGTAGATACTGATTTCAATGTAAATGTGTTAACCGGTTCAGATGGATTTT
TCCGCGGGGCATCAGGGGGACATTGTGATACAGCTTATGGTTCTAAAGTAACAATTGTGGTTGCCCCATCAGTCAGGGGA
AGAATTCCAACGATTCGTGATAAAGTAACTAACATTGTTACCCCCGGGAAAACAGTAGACGTAGTTGTTACTGAAAGGGG
TATATGTGTTAACCCTGAACGTGAGGATATACTTAAAGATTTAAAGAATGTAAAGGATATAGAACTAATTGATATCCATG
AATTAAAAGATAAAGTAGAATCTCTGACCGGCAAACCTGAACCACCTTTATATGATGAAAAGATTACTGGCTTGATACAG
TACCGGGATGGGACTATAATAGATGTAGTTAGAAAAATCTCTGACAGATATTAG

Upstream 100 bases:

>100_bases
TTGGTGTGGTGACTGTTGATGGAAAAATGGTTGATATACCTGTTATAGAGCGGGCTAAAAAGCTGCTTGACCGGGTAGAA
TCAATAAGGAGGGCTAGTAA

Downstream 100 bases:

>100_bases
GATTAAAAAGGGGTTATACTAATGGAGGAATTATTAAAAGGTAGAGAGGATAGAGTTAGACAACGTAATAATTTTATCAA
ATCATTTAAATATAAAGACC

Product: citrate lyase subunit alpha

Products: NA

Alternate protein names: Citrase alpha chain; Citrate (pro-3S)-lyase alpha chain; Citrate CoA-transferase subunit [H]

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MRENTIPERVGSFKNLRSYSYIKPERKSKIIGSLEEAVNKVNLRDGMTVSFHHHFRDGDLILNQVMDIIADKGVKNLTLA
ATSLRKNHDEIIKHIKSGVIKKIYTSGLRGKLGEEICRGLMDEPVVIYSHGGRAGAIESGNLKIDVAFIATPAADRWGNA
NGVEGTSNCGSLGYTMVDAKYAEKVVVITDNLIEFPPEHISISQENVDCVVEVDKVGNSDRIETGSLRKVSRPKDLYIAK
NVARVISNIKYFQNGFSLQTGSGGISLAVTDFIQELMQERDIKGSFILGGITGAHTDLLKKGLFKKIFDTQTFDLQAVKS
LRENRNHMEIDASLYASAFNKGSLVNNLDFVVLSALEVDTDFNVNVLTGSDGFFRGASGGHCDTAYGSKVTIVVAPSVRG
RIPTIRDKVTNIVTPGKTVDVVVTERGICVNPEREDILKDLKNVKDIELIDIHELKDKVESLTGKPEPPLYDEKITGLIQ
YRDGTIIDVVRKISDRY

Sequences:

>Translated_497_residues
MRENTIPERVGSFKNLRSYSYIKPERKSKIIGSLEEAVNKVNLRDGMTVSFHHHFRDGDLILNQVMDIIADKGVKNLTLA
ATSLRKNHDEIIKHIKSGVIKKIYTSGLRGKLGEEICRGLMDEPVVIYSHGGRAGAIESGNLKIDVAFIATPAADRWGNA
NGVEGTSNCGSLGYTMVDAKYAEKVVVITDNLIEFPPEHISISQENVDCVVEVDKVGNSDRIETGSLRKVSRPKDLYIAK
NVARVISNIKYFQNGFSLQTGSGGISLAVTDFIQELMQERDIKGSFILGGITGAHTDLLKKGLFKKIFDTQTFDLQAVKS
LRENRNHMEIDASLYASAFNKGSLVNNLDFVVLSALEVDTDFNVNVLTGSDGFFRGASGGHCDTAYGSKVTIVVAPSVRG
RIPTIRDKVTNIVTPGKTVDVVVTERGICVNPEREDILKDLKNVKDIELIDIHELKDKVESLTGKPEPPLYDEKITGLIQ
YRDGTIIDVVRKISDRY
>Mature_497_residues
MRENTIPERVGSFKNLRSYSYIKPERKSKIIGSLEEAVNKVNLRDGMTVSFHHHFRDGDLILNQVMDIIADKGVKNLTLA
ATSLRKNHDEIIKHIKSGVIKKIYTSGLRGKLGEEICRGLMDEPVVIYSHGGRAGAIESGNLKIDVAFIATPAADRWGNA
NGVEGTSNCGSLGYTMVDAKYAEKVVVITDNLIEFPPEHISISQENVDCVVEVDKVGNSDRIETGSLRKVSRPKDLYIAK
NVARVISNIKYFQNGFSLQTGSGGISLAVTDFIQELMQERDIKGSFILGGITGAHTDLLKKGLFKKIFDTQTFDLQAVKS
LRENRNHMEIDASLYASAFNKGSLVNNLDFVVLSALEVDTDFNVNVLTGSDGFFRGASGGHCDTAYGSKVTIVVAPSVRG
RIPTIRDKVTNIVTPGKTVDVVVTERGICVNPEREDILKDLKNVKDIELIDIHELKDKVESLTGKPEPPLYDEKITGLIQ
YRDGTIIDVVRKISDRY

Specific function: Represents a citrate:acetyl-ACP transferase [H]

COG id: COG3051

COG function: function code C; Citrate lyase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786832, Length=487, Percent_Identity=50.7186858316222, Blast_Score=520, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006472 [H]

Pfam domain/function: PF04223 CitF [H]

EC number: =4.1.3.6; =2.8.3.10 [H]

Molecular weight: Translated: 54799; Mature: 54799

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRENTIPERVGSFKNLRSYSYIKPERKSKIIGSLEEAVNKVNLRDGMTVSFHHHFRDGDL
CCCCCCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHH
ILNQVMDIIADKGVKNLTLAATSLRKNHDEIIKHIKSGVIKKIYTSGLRGKLGEEICRGL
HHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
MDEPVVIYSHGGRAGAIESGNLKIDVAFIATPAADRWGNANGVEGTSNCGSLGYTMVDAK
CCCCEEEEECCCCCCCEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCCEEEEEHH
YAEKVVVITDNLIEFPPEHISISQENVDCVVEVDKVGNSDRIETGSLRKVSRPKDLYIAK
HHCEEEEEECCHHHCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
NVARVISNIKYFQNGFSLQTGSGGISLAVTDFIQELMQERDIKGSFILGGITGAHTDLLK
HHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH
KGLFKKIFDTQTFDLQAVKSLRENRNHMEIDASLYASAFNKGSLVNNLDFVVLSALEVDT
HHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECC
DFNVNVLTGSDGFFRGASGGHCDTAYGSKVTIVVAPSVRGRIPTIRDKVTNIVTPGKTVD
CCCEEEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEE
VVVTERGICVNPEREDILKDLKNVKDIELIDIHELKDKVESLTGKPEPPLYDEKITGLIQ
EEEECCCEEECCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHCEEEE
YRDGTIIDVVRKISDRY
ECCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRENTIPERVGSFKNLRSYSYIKPERKSKIIGSLEEAVNKVNLRDGMTVSFHHHFRDGDL
CCCCCCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHH
ILNQVMDIIADKGVKNLTLAATSLRKNHDEIIKHIKSGVIKKIYTSGLRGKLGEEICRGL
HHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
MDEPVVIYSHGGRAGAIESGNLKIDVAFIATPAADRWGNANGVEGTSNCGSLGYTMVDAK
CCCCEEEEECCCCCCCEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCCEEEEEHH
YAEKVVVITDNLIEFPPEHISISQENVDCVVEVDKVGNSDRIETGSLRKVSRPKDLYIAK
HHCEEEEEECCHHHCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
NVARVISNIKYFQNGFSLQTGSGGISLAVTDFIQELMQERDIKGSFILGGITGAHTDLLK
HHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH
KGLFKKIFDTQTFDLQAVKSLRENRNHMEIDASLYASAFNKGSLVNNLDFVVLSALEVDT
HHHHHHHHCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECC
DFNVNVLTGSDGFFRGASGGHCDTAYGSKVTIVVAPSVRGRIPTIRDKVTNIVTPGKTVD
CCCEEEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEE
VVVTERGICVNPEREDILKDLKNVKDIELIDIHELKDKVESLTGKPEPPLYDEKITGLIQ
EEEECCCEEECCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHCEEEE
YRDGTIIDVVRKISDRY
ECCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]