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The map label for this gene is pqqE [H]

Identifier: 220931286

GI number: 220931286

Start: 472591

End: 473943

Strand: Direct

Name: pqqE [H]

Synonym: Hore_04410

Alternate gene names: 220931286

Gene position: 472591-473943 (Clockwise)

Preceding gene: 220931285

Following gene: 220931287

Centisome position: 18.33

GC content: 38.65

Gene sequence:

>1353_bases
ATGGGAATTGATTTTTCTTTTGCCAAAAAATTTGCTGTTGAAAAGGCTTTAAAGCAGGCCATGAAATATGTTGAAAAGGA
TCCTGAAAAAAACTTTCTTAAGATTTTAGATCTGGGTGAAAAACTGGTAAGAAGAGATAACCATAAACGGGGAATAAAAA
TTTTTAGAGAAAATTATAAAAAGAATCCGGTAATAAAGGAATATGTCAGGAAATTAAATCATATTGCACCAAGTTACAAG
TACGGGCTGTTAATGAACTTTTTTGTTAATGCTGGTTTACTGGGAATTCCATACCAATATGAAATGGCCGAGAAACTGGG
TGTAAAAGTTCCCTGGACTATTCTGATAGACCCGACAAGTGCCTGTAATCTTTCCTGTGAGGGTTGCTGGGCCGGGAAAT
ACGAGAAGGGAAATTCCCTTGATTTTGATACTATTGACAGGATAATTAATGAAGCCAAAGAACTGGGAATTTATTTTATA
GTATTATCAGGTGGGGAACCGACAGTTTATCCACATTTATTTGATATTTTTGAAAAGCATCAGGATGTTGGGTTTATGAT
GTATACAAATGGAACCCTGATAGATGATGATTTTGCGGACAGACTTTTAGAAACCGGTAATGTGACCCCGGTTATAAGCC
TTGAGGGTTTCCGGGAATCCACTGACAGGCGAAGGGGTGAAGGTACTTATGATAAAATAATGTCTGCTATGGATAGGTTG
CATGAACGGGGTATTATTTTTGGAGCCAGTGTAACAGTAACCCGTAATAATGTGGATGAGCTATTCGGGGATGAGTTTAT
TGACCTGATGATTGAAAAGGGCGTAATATATATGTGGTCATTCCACTATGTTCCGATTGGTAGGAATCCAAACCTGGATT
TAATGCTTACTCCCGGGCAAAGGGCCAGGCTTGCTGATAGGGTAAATCATCTACGGAATACAAAGCCTCTTTTCGTTGCA
GATTTCTGGAATGATGGTACTTATACTCAGGGGTGTATTGCAGGAGGAAAGCGTTATTTTCACATTAACTCCAAGGGAGA
GGTAGAACCATGTGCATTTGTTCATTTTGCTATTGACAACATTAAAGATAAGCCTCTAAAGCAAGTTCTGCAAAACCCTC
TGTTCAAATCATATCAAAAGAGGCAGCCTTTCAATGAAAATTTGATGTGTCCCTGTCCCATTATTGATAATCCCCAGGCA
TTAAGGGATATAGTTGAGGAAAGTGGTGCTTATCCAACACATGAAGGTGCAGATAGTATACTGAAAGGAGATTTAGCAAA
AAGACTTGATGAAATATCTTCCAGGTGGCAGGAAGTGTCCAAGCCCATCAATGAAAAGAGGATTAAAGGATAG

Upstream 100 bases:

>100_bases
TTACCTATTTCTGAGGGGGTGATAGTAAAAAGCCAGGTGAAAATTTTTATTGATAGTGTCTGTGATTTATTACAGAAACT
TATAAAAGGGGGCTTAAGTG

Downstream 100 bases:

>100_bases
TAAAGATTTTCAGGACACCAACAGTATTTTACTTTTTTATCTTTTAATTATTTTTATGATGGCCGGAAAGCAGGAAAGTC
TTCATTAAATATAATAACTT

Product: Radical SAM domain-containing protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MGIDFSFAKKFAVEKALKQAMKYVEKDPEKNFLKILDLGEKLVRRDNHKRGIKIFRENYKKNPVIKEYVRKLNHIAPSYK
YGLLMNFFVNAGLLGIPYQYEMAEKLGVKVPWTILIDPTSACNLSCEGCWAGKYEKGNSLDFDTIDRIINEAKELGIYFI
VLSGGEPTVYPHLFDIFEKHQDVGFMMYTNGTLIDDDFADRLLETGNVTPVISLEGFRESTDRRRGEGTYDKIMSAMDRL
HERGIIFGASVTVTRNNVDELFGDEFIDLMIEKGVIYMWSFHYVPIGRNPNLDLMLTPGQRARLADRVNHLRNTKPLFVA
DFWNDGTYTQGCIAGGKRYFHINSKGEVEPCAFVHFAIDNIKDKPLKQVLQNPLFKSYQKRQPFNENLMCPCPIIDNPQA
LRDIVEESGAYPTHEGADSILKGDLAKRLDEISSRWQEVSKPINEKRIKG

Sequences:

>Translated_450_residues
MGIDFSFAKKFAVEKALKQAMKYVEKDPEKNFLKILDLGEKLVRRDNHKRGIKIFRENYKKNPVIKEYVRKLNHIAPSYK
YGLLMNFFVNAGLLGIPYQYEMAEKLGVKVPWTILIDPTSACNLSCEGCWAGKYEKGNSLDFDTIDRIINEAKELGIYFI
VLSGGEPTVYPHLFDIFEKHQDVGFMMYTNGTLIDDDFADRLLETGNVTPVISLEGFRESTDRRRGEGTYDKIMSAMDRL
HERGIIFGASVTVTRNNVDELFGDEFIDLMIEKGVIYMWSFHYVPIGRNPNLDLMLTPGQRARLADRVNHLRNTKPLFVA
DFWNDGTYTQGCIAGGKRYFHINSKGEVEPCAFVHFAIDNIKDKPLKQVLQNPLFKSYQKRQPFNENLMCPCPIIDNPQA
LRDIVEESGAYPTHEGADSILKGDLAKRLDEISSRWQEVSKPINEKRIKG
>Mature_449_residues
GIDFSFAKKFAVEKALKQAMKYVEKDPEKNFLKILDLGEKLVRRDNHKRGIKIFRENYKKNPVIKEYVRKLNHIAPSYKY
GLLMNFFVNAGLLGIPYQYEMAEKLGVKVPWTILIDPTSACNLSCEGCWAGKYEKGNSLDFDTIDRIINEAKELGIYFIV
LSGGEPTVYPHLFDIFEKHQDVGFMMYTNGTLIDDDFADRLLETGNVTPVISLEGFRESTDRRRGEGTYDKIMSAMDRLH
ERGIIFGASVTVTRNNVDELFGDEFIDLMIEKGVIYMWSFHYVPIGRNPNLDLMLTPGQRARLADRVNHLRNTKPLFVAD
FWNDGTYTQGCIAGGKRYFHINSKGEVEPCAFVHFAIDNIKDKPLKQVLQNPLFKSYQKRQPFNENLMCPCPIIDNPQAL
RDIVEESGAYPTHEGADSILKGDLAKRLDEISSRWQEVSKPINEKRIKG

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 51564; Mature: 51433

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIDFSFAKKFAVEKALKQAMKYVEKDPEKNFLKILDLGEKLVRRDNHKRGIKIFRENYK
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
KNPVIKEYVRKLNHIAPSYKYGLLMNFFVNAGLLGIPYQYEMAEKLGVKVPWTILIDPTS
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEECCCCHHHHHHHCCCCCCEEEEECCCC
ACNLSCEGCWAGKYEKGNSLDFDTIDRIINEAKELGIYFIVLSGGEPTVYPHLFDIFEKH
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
QDVGFMMYTNGTLIDDDFADRLLETGNVTPVISLEGFRESTDRRRGEGTYDKIMSAMDRL
CCCCEEEEECCCEECHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHH
HERGIIFGASVTVTRNNVDELFGDEFIDLMIEKGVIYMWSFHYVPIGRNPNLDLMLTPGQ
HHCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCEEEEECCCC
RARLADRVNHLRNTKPLFVADFWNDGTYTQGCIAGGKRYFHINSKGEVEPCAFVHFAIDN
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCCCEEEEEHHHC
IKDKPLKQVLQNPLFKSYQKRQPFNENLMCPCPIIDNPQALRDIVEESGAYPTHEGADSI
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
LKGDLAKRLDEISSRWQEVSKPINEKRIKG
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure 
GIDFSFAKKFAVEKALKQAMKYVEKDPEKNFLKILDLGEKLVRRDNHKRGIKIFRENYK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
KNPVIKEYVRKLNHIAPSYKYGLLMNFFVNAGLLGIPYQYEMAEKLGVKVPWTILIDPTS
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEECCCCHHHHHHHCCCCCCEEEEECCCC
ACNLSCEGCWAGKYEKGNSLDFDTIDRIINEAKELGIYFIVLSGGEPTVYPHLFDIFEKH
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
QDVGFMMYTNGTLIDDDFADRLLETGNVTPVISLEGFRESTDRRRGEGTYDKIMSAMDRL
CCCCEEEEECCCEECHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHH
HERGIIFGASVTVTRNNVDELFGDEFIDLMIEKGVIYMWSFHYVPIGRNPNLDLMLTPGQ
HHCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCEEEEECCCC
RARLADRVNHLRNTKPLFVADFWNDGTYTQGCIAGGKRYFHINSKGEVEPCAFVHFAIDN
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCCCEEEEEHHHC
IKDKPLKQVLQNPLFKSYQKRQPFNENLMCPCPIIDNPQALRDIVEESGAYPTHEGADSI
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
LKGDLAKRLDEISSRWQEVSKPINEKRIKG
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA