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The map label for this gene is rbsR [H]

Identifier: 220931265

GI number: 220931265

Start: 443671

End: 444696

Strand: Direct

Name: rbsR [H]

Synonym: Hore_04200

Alternate gene names: 220931265

Gene position: 443671-444696 (Clockwise)

Preceding gene: 220931264

Following gene: 220931266

Centisome position: 17.21

GC content: 38.5

Gene sequence:

>1026_bases
ATGGCTACCATTAAGGATATAGCAAAGATAGCAGGAGTGTCAACAGCTACGGTCTCCAGGGTAATAAATAATTACCCTGA
TGTCAGTGAAAAAACCAAGAAAAAAATCCTGAAAATCATGAAAGAAAATAATTACAGGCCTAATTCTGTTGCCAGAAGCC
TGTCTACCAGCAAGTCTAATATTATAGGTATATTTTTTACTGACCATTTTAATACCGGAATACACCATCCCTTTTTCCGG
GAGGTTATTTATGGTCTGGAGAAAATATTTGATGAAAAAGGATATGATATATTATATTTTACTAATAGAAAATGGGGAGA
AAATTTCAGCTATGTAGAGAAGTGCCATGACAGGCAGGTAGATGGGGTGGTATTGATGGGGGTTCCAAAGACCGATTCCA
ATATCCCCAAACTTCTCGATTCCGATATACCAACTGTTTTTGTTGATCTTGATATAGTTGGTAAAAAAGCCTCATATGTT
ATTTCAGATAATTATAGAGGGGCAGAAATGGCTGTTAATTATCTACACAGTCTAGGCCATACCAGAATCGGGATGATTAT
GGGAATAAGTTCGACCAAGGTTACCAATGATAGGTTGCTTGGCTATCAGACAGCCATTAAAAATTTAGGTCTTGTCTATA
ACTCACAGTGGATACTCGATGGTAGATACACTGAAGAAGGTGGTTATCAGGCCATGTCTAAATATCTGGAGATGGATGAG
AGGCCAACAGCTATTTTCTGTCAGAGTGATTCCATGGCAATTGGGGCTATGCAGGCCATACATGAAGCCGGTATGAGTGT
CCCTGAAGATTTTTCCTTAATTGGTTTTGATGATATTGAAGTGAGCCGCTATGTAAACCCTGCTTTAACTACGATAAAAC
AGGATAAAATAGGTCTGGGAAGGGCAGCCGGTGAACTGTTGATAAATATTGTAGAAAATGAGAATGAAAGTCAAGCTCCT
GTTATTCTTCCAGTTGAACTGGTTAAGAGAGATTCCTGTGGTCGACCTAATTTAGACATGGTTTAA

Upstream 100 bases:

>100_bases
CGAAATAAAATTCGAGGAAGGAATTTAATATTATATCAAGAATTTAAATAACATAATGAAATCGATTACGATTATTTGTT
TAAATATGAGGTGATAAAAC

Downstream 100 bases:

>100_bases
TATACTGTACTATTATTTTATTTTAATTTTTTTAAAAATTTTTGATTAAAAAAAAAAGGAATATTTACATATTTACAGAA
TACTTATTATATAGAAATAC

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MATIKDIAKIAGVSTATVSRVINNYPDVSEKTKKKILKIMKENNYRPNSVARSLSTSKSNIIGIFFTDHFNTGIHHPFFR
EVIYGLEKIFDEKGYDILYFTNRKWGENFSYVEKCHDRQVDGVVLMGVPKTDSNIPKLLDSDIPTVFVDLDIVGKKASYV
ISDNYRGAEMAVNYLHSLGHTRIGMIMGISSTKVTNDRLLGYQTAIKNLGLVYNSQWILDGRYTEEGGYQAMSKYLEMDE
RPTAIFCQSDSMAIGAMQAIHEAGMSVPEDFSLIGFDDIEVSRYVNPALTTIKQDKIGLGRAAGELLINIVENENESQAP
VILPVELVKRDSCGRPNLDMV

Sequences:

>Translated_341_residues
MATIKDIAKIAGVSTATVSRVINNYPDVSEKTKKKILKIMKENNYRPNSVARSLSTSKSNIIGIFFTDHFNTGIHHPFFR
EVIYGLEKIFDEKGYDILYFTNRKWGENFSYVEKCHDRQVDGVVLMGVPKTDSNIPKLLDSDIPTVFVDLDIVGKKASYV
ISDNYRGAEMAVNYLHSLGHTRIGMIMGISSTKVTNDRLLGYQTAIKNLGLVYNSQWILDGRYTEEGGYQAMSKYLEMDE
RPTAIFCQSDSMAIGAMQAIHEAGMSVPEDFSLIGFDDIEVSRYVNPALTTIKQDKIGLGRAAGELLINIVENENESQAP
VILPVELVKRDSCGRPNLDMV
>Mature_340_residues
ATIKDIAKIAGVSTATVSRVINNYPDVSEKTKKKILKIMKENNYRPNSVARSLSTSKSNIIGIFFTDHFNTGIHHPFFRE
VIYGLEKIFDEKGYDILYFTNRKWGENFSYVEKCHDRQVDGVVLMGVPKTDSNIPKLLDSDIPTVFVDLDIVGKKASYVI
SDNYRGAEMAVNYLHSLGHTRIGMIMGISSTKVTNDRLLGYQTAIKNLGLVYNSQWILDGRYTEEGGYQAMSKYLEMDER
PTAIFCQSDSMAIGAMQAIHEAGMSVPEDFSLIGFDDIEVSRYVNPALTTIKQDKIGLGRAAGELLINIVENENESQAPV
ILPVELVKRDSCGRPNLDMV

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=346, Percent_Identity=33.2369942196532, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1787948, Length=339, Percent_Identity=35.693215339233, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1790194, Length=338, Percent_Identity=34.0236686390533, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789202, Length=343, Percent_Identity=32.9446064139942, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789068, Length=346, Percent_Identity=30.9248554913295, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1788474, Length=335, Percent_Identity=30.7462686567164, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1787580, Length=320, Percent_Identity=28.4375, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1786540, Length=343, Percent_Identity=30.3206997084548, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1789456, Length=300, Percent_Identity=31, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1787906, Length=351, Percent_Identity=25.0712250712251, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1790715, Length=329, Percent_Identity=27.6595744680851, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786268, Length=313, Percent_Identity=24.6006389776358, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI48994940, Length=326, Percent_Identity=26.6871165644172, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1790689, Length=333, Percent_Identity=24.9249249249249, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1790192, Length=212, Percent_Identity=25.4716981132075, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38129; Mature: 37998

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKDIAKIAGVSTATVSRVINNYPDVSEKTKKKILKIMKENNYRPNSVARSLSTSKSN
CCCHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
IIGIFFTDHFNTGIHHPFFREVIYGLEKIFDEKGYDILYFTNRKWGENFSYVEKCHDRQV
EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCC
DGVVLMGVPKTDSNIPKLLDSDIPTVFVDLDIVGKKASYVISDNYRGAEMAVNYLHSLGH
CCEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCC
TRIGMIMGISSTKVTNDRLLGYQTAIKNLGLVYNSQWILDGRYTEEGGYQAMSKYLEMDE
CCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEECCEEEECCEECCCCCHHHHHHHHHCCC
RPTAIFCQSDSMAIGAMQAIHEAGMSVPEDFSLIGFDDIEVSRYVNPALTTIKQDKIGLG
CCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHCCHHHHHHHHCCCCCC
RAAGELLINIVENENESQAPVILPVELVKRDSCGRPNLDMV
HHHHHHHHHEECCCCCCCCCEEEEHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ATIKDIAKIAGVSTATVSRVINNYPDVSEKTKKKILKIMKENNYRPNSVARSLSTSKSN
CCHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
IIGIFFTDHFNTGIHHPFFREVIYGLEKIFDEKGYDILYFTNRKWGENFSYVEKCHDRQV
EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCC
DGVVLMGVPKTDSNIPKLLDSDIPTVFVDLDIVGKKASYVISDNYRGAEMAVNYLHSLGH
CCEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCC
TRIGMIMGISSTKVTNDRLLGYQTAIKNLGLVYNSQWILDGRYTEEGGYQAMSKYLEMDE
CCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEECCEEEECCEECCCCCHHHHHHHHHCCC
RPTAIFCQSDSMAIGAMQAIHEAGMSVPEDFSLIGFDDIEVSRYVNPALTTIKQDKIGLG
CCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHCCHHHHHHHHCCCCCC
RAAGELLINIVENENESQAPVILPVELVKRDSCGRPNLDMV
HHHHHHHHHEECCCCCCCCCEEEEHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]