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The map label for this gene is ccmF [H]

Identifier: 220931223

GI number: 220931223

Start: 388633

End: 390612

Strand: Direct

Name: ccmF [H]

Synonym: Hore_03760

Alternate gene names: 220931223

Gene position: 388633-390612 (Clockwise)

Preceding gene: 220931222

Following gene: 220931224

Centisome position: 15.07

GC content: 37.47

Gene sequence:

>1980_bases
ATGATTTCAACTGGTGACTTATCTATACTACTGGCCTCTATTTTTACTGTTATATCAATAATAACAGCCGTTATATGTTT
CTGGAAGGAAGAGAAGGCCGGTCTTTTCATAAGGGTTTCCCGGCTGTCTAATTTTTTATCAATCATTATGGTAACAGTTG
CAGTAGTTATATTATTGAAAGCCCTTATCAGGAGTAATTTTAATTATGAATATGTTGTTAGATACACCAGTCGAGATCTA
CCTTTAATTTATAAAATAAGTGCCCTGTGGGCCGGACAGTCTGGTTCATTACTATTGTGGCTATTTTTCATGTCGTTAAC
TGGACTTATAGTTCAACTTAATAAGCATTTTGGTAAAGAAAATTATGACATTGCGGTTACAGGTATTATTAATGTCATCA
GGTTGTTTTTTATGGCAGTACTTACTGGTCCGGCATCCCCCTTTAAAATTTCTGCTCCAGCTCCATATTTTGGCCAGGGA
TTAAATCCGATGCTTCAAAATATTTATATGGCAATTCATCCCCTGTTTTTGTTTGCAGCTTACAGTGGTTTTATCGTACC
TTTTTCGTTGGCCACTGTCGGGGTATGGCAGAGGGATAAAAAATATTTATGGCTTGAACGGTCTCGCCTCTGGGTATTAT
TTTCCTGGGGTCTGTTAACTGCAGGTATTATTACGGGAGGGAAATGGGCCTATACAGAGCTTGGCTGGGGGGGATACTGG
GCATGGGACCCGGTAGAAAATGCCTCCCTGTTTCCCTGGTTAATAGCAACAGCCCTGTTACATAACCTTATTTTGCGTAA
AAGGGCTGGTGGGGTTAAACTCTTGAATTTTATTTTAATATCACTATCTTTTGTTTTAACTATCTTCGGTACTTTTCTAA
CCAGAAGTGGTCTTCTGGATTCTGTTCATGCCTTCAGTAATGGTAAAATTGGTTATTATTTCTTGTTTATATTAATAGTT
CTGGTCTTACTAGTAATCTATCTTATAATTACCAGATACAATTATTTTAAAAAAACCAACCTTAATATAAAATTATTTTC
AGTAGAGGGAGTTCTGATTTTAACCGGCATTTTCCTTATGTTTATCTTTGGAGGAGTTTTACTTGGTACACTATTCCCGG
TCATAACAGAGGTTTTCGTAGAAAGGAGAATAATCCTTAACAAGGTTTTTTATAACCAGTTTACAGTTCCTTTCTGGTTA
CTCATTGTTTTTTTAATGGGATTATGCCCTCTTATAAAAGGGGGGAAGTGGAAGGCAAAGGAGTTTGTCCTGCCTTTACT
GGCCGGTGTGGTAATGTTTATAGGAATAATAATTAAGTACAATCACGGTCTGGCGGCCTTTTCTTTCGCCATTTGTATTT
TTGCTTCCGGGTCAATTATTCAGAATTTTATAATAGATATTTTAAAATTGAGATACAAAAACGATAAAAGCCTCCTGGCC
AGTATCATTAAATTATTTATATTACATAAGCGAAAACCTGGGTCATATATAATACATATCGGTATAATTTTAATTGTTAT
AGGGATTACAGGTTCCTCCCTTCTGGGGAACGGAAAGTTACAGGTGTTAAGGCCAGGGGAGGAAATGGTTTTAAAGAATT
ACCGCTTTGAATATCAAGGGCTTACCAGAAAGGTTTTTTATACAAAAACCAGGGTTATTGCAAAGTTACAGGTTTATAGG
GGAAAAAGGCGGCTGGGTGATATTACTTCAGAGAAAATTTTTTACCCTGGTCATGACCAGCCGGATACTGAAATAGGTCT
AATGAGTAAAATAAATGAGGATATTTATTTTAACTTAGCCGGTTGGGATGGAGACCAGGCCCGGATAGAGGTAAATATAT
ACCCTCTGGTATCATTAATATGGACAGGAGCCCTGGTTATCTGTATCGGGGTTGTGGTCCTTGTTTTACCAGTAAGACAG
GAGATAGATTATCAGCAAGGAACAAAGTCAGGCAGGGGTTGCCCGGGATGGAAGTATTGA

Upstream 100 bases:

>100_bases
GGGAAGTGATTGTAGAGGGTAAATTTATTGAAAATGATGTATTCAGGGTCACAAAACTTATGCTACAGTGCCCATCTAAA
TATGAAAAGGGAGAAGAATA

Downstream 100 bases:

>100_bases
GAGTAAAGCAACTTACAAAAAAGATTGGTTACAGAACTATACTTTCTAATATTAACCTGGAGGTATCCTCGGGGGAACTT
GTTGTCTTAATCGGTCCAAA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 659; Mature: 659

Protein sequence:

>659_residues
MISTGDLSILLASIFTVISIITAVICFWKEEKAGLFIRVSRLSNFLSIIMVTVAVVILLKALIRSNFNYEYVVRYTSRDL
PLIYKISALWAGQSGSLLLWLFFMSLTGLIVQLNKHFGKENYDIAVTGIINVIRLFFMAVLTGPASPFKISAPAPYFGQG
LNPMLQNIYMAIHPLFLFAAYSGFIVPFSLATVGVWQRDKKYLWLERSRLWVLFSWGLLTAGIITGGKWAYTELGWGGYW
AWDPVENASLFPWLIATALLHNLILRKRAGGVKLLNFILISLSFVLTIFGTFLTRSGLLDSVHAFSNGKIGYYFLFILIV
LVLLVIYLIITRYNYFKKTNLNIKLFSVEGVLILTGIFLMFIFGGVLLGTLFPVITEVFVERRIILNKVFYNQFTVPFWL
LIVFLMGLCPLIKGGKWKAKEFVLPLLAGVVMFIGIIIKYNHGLAAFSFAICIFASGSIIQNFIIDILKLRYKNDKSLLA
SIIKLFILHKRKPGSYIIHIGIILIVIGITGSSLLGNGKLQVLRPGEEMVLKNYRFEYQGLTRKVFYTKTRVIAKLQVYR
GKRRLGDITSEKIFYPGHDQPDTEIGLMSKINEDIYFNLAGWDGDQARIEVNIYPLVSLIWTGALVICIGVVVLVLPVRQ
EIDYQQGTKSGRGCPGWKY

Sequences:

>Translated_659_residues
MISTGDLSILLASIFTVISIITAVICFWKEEKAGLFIRVSRLSNFLSIIMVTVAVVILLKALIRSNFNYEYVVRYTSRDL
PLIYKISALWAGQSGSLLLWLFFMSLTGLIVQLNKHFGKENYDIAVTGIINVIRLFFMAVLTGPASPFKISAPAPYFGQG
LNPMLQNIYMAIHPLFLFAAYSGFIVPFSLATVGVWQRDKKYLWLERSRLWVLFSWGLLTAGIITGGKWAYTELGWGGYW
AWDPVENASLFPWLIATALLHNLILRKRAGGVKLLNFILISLSFVLTIFGTFLTRSGLLDSVHAFSNGKIGYYFLFILIV
LVLLVIYLIITRYNYFKKTNLNIKLFSVEGVLILTGIFLMFIFGGVLLGTLFPVITEVFVERRIILNKVFYNQFTVPFWL
LIVFLMGLCPLIKGGKWKAKEFVLPLLAGVVMFIGIIIKYNHGLAAFSFAICIFASGSIIQNFIIDILKLRYKNDKSLLA
SIIKLFILHKRKPGSYIIHIGIILIVIGITGSSLLGNGKLQVLRPGEEMVLKNYRFEYQGLTRKVFYTKTRVIAKLQVYR
GKRRLGDITSEKIFYPGHDQPDTEIGLMSKINEDIYFNLAGWDGDQARIEVNIYPLVSLIWTGALVICIGVVVLVLPVRQ
EIDYQQGTKSGRGCPGWKY
>Mature_659_residues
MISTGDLSILLASIFTVISIITAVICFWKEEKAGLFIRVSRLSNFLSIIMVTVAVVILLKALIRSNFNYEYVVRYTSRDL
PLIYKISALWAGQSGSLLLWLFFMSLTGLIVQLNKHFGKENYDIAVTGIINVIRLFFMAVLTGPASPFKISAPAPYFGQG
LNPMLQNIYMAIHPLFLFAAYSGFIVPFSLATVGVWQRDKKYLWLERSRLWVLFSWGLLTAGIITGGKWAYTELGWGGYW
AWDPVENASLFPWLIATALLHNLILRKRAGGVKLLNFILISLSFVLTIFGTFLTRSGLLDSVHAFSNGKIGYYFLFILIV
LVLLVIYLIITRYNYFKKTNLNIKLFSVEGVLILTGIFLMFIFGGVLLGTLFPVITEVFVERRIILNKVFYNQFTVPFWL
LIVFLMGLCPLIKGGKWKAKEFVLPLLAGVVMFIGIIIKYNHGLAAFSFAICIFASGSIIQNFIIDILKLRYKNDKSLLA
SIIKLFILHKRKPGSYIIHIGIILIVIGITGSSLLGNGKLQVLRPGEEMVLKNYRFEYQGLTRKVFYTKTRVIAKLQVYR
GKRRLGDITSEKIFYPGHDQPDTEIGLMSKINEDIYFNLAGWDGDQARIEVNIYPLVSLIWTGALVICIGVVVLVLPVRQ
EIDYQQGTKSGRGCPGWKY

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=649, Percent_Identity=27.4268104776579, Blast_Score=222, Evalue=6e-59,
Organism=Escherichia coli, GI1790511, Length=431, Percent_Identity=29.9303944315545, Blast_Score=160, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 74473; Mature: 74473

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTGDLSILLASIFTVISIITAVICFWKEEKAGLFIRVSRLSNFLSIIMVTVAVVILLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
ALIRSNFNYEYVVRYTSRDLPLIYKISALWAGQSGSLLLWLFFMSLTGLIVQLNKHFGKE
HHHHCCCCEEEEEEEECCCCCEEEEEEEHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
NYDIAVTGIINVIRLFFMAVLTGPASPFKISAPAPYFGQGLNPMLQNIYMAIHPLFLFAA
CCCEEHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHH
YSGFIVPFSLATVGVWQRDKKYLWLERSRLWVLFSWGLLTAGIITGGKWAYTELGWGGYW
HCCCEEHHHHHHHHHHHCCCCEEEEECCCEEEEEEHHHHHHHHHCCCCEEEEECCCCCEE
AWDPVENASLFPWLIATALLHNLILRKRAGGVKLLNFILISLSFVLTIFGTFLTRSGLLD
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SVHAFSNGKIGYYFLFILIVLVLLVIYLIITRYNYFKKTNLNIKLFSVEGVLILTGIFLM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECCHHHHHHHHHH
FIFGGVLLGTLFPVITEVFVERRIILNKVFYNQFTVPFWLLIVFLMGLCPLIKGGKWKAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
EFVLPLLAGVVMFIGIIIKYNHGLAAFSFAICIFASGSIIQNFIIDILKLRYKNDKSLLA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
SIIKLFILHKRKPGSYIIHIGIILIVIGITGSSLLGNGKLQVLRPGEEMVLKNYRFEYQG
HHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCEECCCCEEEECCCHHHHHHHCCCHHCC
LTRKVFYTKTRVIAKLQVYRGKRRLGDITSEKIFYPGHDQPDTEIGLMSKINEDIYFNLA
CHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEECCCCCCCCCCHHHHHHCCCCEEEEEE
GWDGDQARIEVNIYPLVSLIWTGALVICIGVVVLVLPVRQEIDYQQGTKSGRGCPGWKY
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MISTGDLSILLASIFTVISIITAVICFWKEEKAGLFIRVSRLSNFLSIIMVTVAVVILLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
ALIRSNFNYEYVVRYTSRDLPLIYKISALWAGQSGSLLLWLFFMSLTGLIVQLNKHFGKE
HHHHCCCCEEEEEEEECCCCCEEEEEEEHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
NYDIAVTGIINVIRLFFMAVLTGPASPFKISAPAPYFGQGLNPMLQNIYMAIHPLFLFAA
CCCEEHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHH
YSGFIVPFSLATVGVWQRDKKYLWLERSRLWVLFSWGLLTAGIITGGKWAYTELGWGGYW
HCCCEEHHHHHHHHHHHCCCCEEEEECCCEEEEEEHHHHHHHHHCCCCEEEEECCCCCEE
AWDPVENASLFPWLIATALLHNLILRKRAGGVKLLNFILISLSFVLTIFGTFLTRSGLLD
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SVHAFSNGKIGYYFLFILIVLVLLVIYLIITRYNYFKKTNLNIKLFSVEGVLILTGIFLM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECCHHHHHHHHHH
FIFGGVLLGTLFPVITEVFVERRIILNKVFYNQFTVPFWLLIVFLMGLCPLIKGGKWKAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
EFVLPLLAGVVMFIGIIIKYNHGLAAFSFAICIFASGSIIQNFIIDILKLRYKNDKSLLA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
SIIKLFILHKRKPGSYIIHIGIILIVIGITGSSLLGNGKLQVLRPGEEMVLKNYRFEYQG
HHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCEECCCCEEEECCCHHHHHHHCCCHHCC
LTRKVFYTKTRVIAKLQVYRGKRRLGDITSEKIFYPGHDQPDTEIGLMSKINEDIYFNLA
CHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEECCCCCCCCCCHHHHHHCCCCEEEEEE
GWDGDQARIEVNIYPLVSLIWTGALVICIGVVVLVLPVRQEIDYQQGTKSGRGCPGWKY
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]